Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_27750 |
Symbol | sdhA |
ID | 8388099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3000509 |
End bp | 3002425 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644976806 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_003134583 |
Protein GI | 257056751 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0951337 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAGG TCGAGCGGCA CAGCTACGAC GTCGTGGTGA TCGGCGCCGG CGGGGCGGGG CTGCGGGCGG TGATCGAGGC ACGCCAGCGG GGGCTTTCCG TCGCGGTGGT GTCCAAATCG TTGTTCGGCA AGGCGCACAC CGTCATGGCC GAAGGCGGCT GTGCGGCGTC GATGGGCAAC GTGAACCCCA ACGACGGCTG GCAGGTGCAC TTCCGCGACA CCATGCGGGG CGGCAAGTTC CTCAACGACT GGCGCATGGC GGAACTGCAC GCAAAGGAAG CCCCCGACCG GGTGTGGGAG CTGGAGACGT ACGGTGCGTT GTTCGATCGC ACTCCGGACG GGCGGATCAG TCAACGTAAC TTCGGCGGAC ACACGTATCC GCGGCTCGCA CACGTCGGGG ACCGGACCGG ACTCGAATTG ATCCGCACGA TGCAGCAGAA GATCGTGTCG CTGCAGCAGG AGGATTACGC CGCCCACGGC GACTACGAAG CCAAGCTCAA GGTGTTCGAC GAATGCACGA TCACCGAGTT GTTGACCCAG GACGGCGCGA TCGCGGGCGC GTTCGGTTAC TGGCGTGAGT CCGGCCGGTT CGTGCTGTTC GAAGCACCGG CCGTCATCCT CGCCACCGGC GGTATCGGCA AGTCGTTCCA GGTGACGTCG AACTCGTGGG AATACACGGG TGACGGTCAC GCGCTCGCGC TGCGGGCCGG TGCCACGTTG ATCAACATGG AGTTCGTGCA GTTCCATCCC ACCGGGATGG TCTGGCCGCC GAGTGTGAAA GGCATCCTCG TCACCGAAGG CGTGCGTGGG GACGGCGGTG TGCTCCGCAA CTCCGAGGGC GAGCGGTTCA TGTTCCGCTA CATCCCGGAC GTGTTCAAGG GGCAGTACGC GGAGACGGAA GAGGAAGCCG ATCGCTGGTA CGAAGACCCT GACAACAATC GCCGCACCCC TGATCTGCTC CCTCGGGACG AGGTGGCGCG GGCGATCAAC ACCGAGGTGA AGGAGGGACG GGGATCACCG CATGGCGGTG TGTTCCTCGA CATCGCGAGT CGGCTGCCCG CCGAGGAGAT CAAACGGCGC TTGCCTTCGA TGTACCACCA GTTCAAGGAA CTGGCCGACG TGGACATCAC GGCCGAACCG ATGGAGGTCG GTCCGACGTG CCACTACGTG ATGGGTGGCA TCGAGGTCGA TCCGGACACC GCGGCCTCGA GTGTGCCCGG CCTGTTCGCG GCGGGGGAAT GCGCGGGCGG CATGCACGGG TCCAACCGGC TCGGTGGCAA TTCGCTCTCG GACCTGCTGG TGTTCGGACG GAGGGCGGGG ATCGGCGCTG CGGACTACGT CGATTCGCTC ACCAGTCGAC CCACTGTGTC CGCAGTGGAC TTGGCCATGG CCGCGAGGAC GGCTTTGGCG CCGTTCGACC CACCGCGGGA CGGACAGGCG GCGGAGAACC CCTACTCGCT GCAGACCGAA TTGCAGCAGT GCATGAACGA TCTCGTGGGC ATCATCCGGA CGGCCTCGGA GATGGAGCAG GCCCTGGAGA AGCTCGACGA GATCCGAGAG CGGCTCCGGG CGGTGACGGT GGAGGGGCAC CGACAGTACA ACCCGGGCTG GCACCTGGCG TTGGATCTTC GAAACATGCT GCTGGTGAGC GAGTGCGTGG CGCGTTCGGC GTTGCGACGC ACCGAGAGCA GGGGTGGACA CACACGTGAC GACTACCCGC AGATGGACGC GAACTGGCGC AAGGTGCTGC TCGTGTGTTC GGCCACTGAT CGTGAAGCGC CGCTTCCGCG TATCGAGGTG ACCACGAAGG AGCAGAAGCC GATGCGGGAC GACCTGTTCG CCCTGTTCGA GCTCTCCGAA CTGGAGAAGT ACTACACCGA CGAGGAACTG GCCGAGCATC CGGAAAGGAC GGCCTGA
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Protein sequence | MTEVERHSYD VVVIGAGGAG LRAVIEARQR GLSVAVVSKS LFGKAHTVMA EGGCAASMGN VNPNDGWQVH FRDTMRGGKF LNDWRMAELH AKEAPDRVWE LETYGALFDR TPDGRISQRN FGGHTYPRLA HVGDRTGLEL IRTMQQKIVS LQQEDYAAHG DYEAKLKVFD ECTITELLTQ DGAIAGAFGY WRESGRFVLF EAPAVILATG GIGKSFQVTS NSWEYTGDGH ALALRAGATL INMEFVQFHP TGMVWPPSVK GILVTEGVRG DGGVLRNSEG ERFMFRYIPD VFKGQYAETE EEADRWYEDP DNNRRTPDLL PRDEVARAIN TEVKEGRGSP HGGVFLDIAS RLPAEEIKRR LPSMYHQFKE LADVDITAEP MEVGPTCHYV MGGIEVDPDT AASSVPGLFA AGECAGGMHG SNRLGGNSLS DLLVFGRRAG IGAADYVDSL TSRPTVSAVD LAMAARTALA PFDPPRDGQA AENPYSLQTE LQQCMNDLVG IIRTASEMEQ ALEKLDEIRE RLRAVTVEGH RQYNPGWHLA LDLRNMLLVS ECVARSALRR TESRGGHTRD DYPQMDANWR KVLLVCSATD REAPLPRIEV TTKEQKPMRD DLFALFELSE LEKYYTDEEL AEHPERTA
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