Gene Svir_27490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_27490 
Symbol 
ID8388073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2969892 
End bp2971073 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content67% 
IMG OID644976780 
Productdeacetylase, histone deacetylase/acetoin utilization protein 
Protein accessionYP_003134557 
Protein GI257056725 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAGCT CGGCCGTTGT CTGGGATTCC GCCCTCCTCG CCTACAACTT CGGTAGCGAC 
CACCCGTTCA ATCCCGTGCG CCTGGACCTG ACGGTCCGAT TGGCCACCGC GCTCGGCGTG
TTGCAGGACG TGCCGCTGCT GGTACCGGAC CCGGTGCAGG CCGAAGAGCT GTACCGCGCA
CACACCGCTG AATACGTGGA GGCGGTCAAA CAGGCGCCGA TGGCGGGCTG GGACGTCGGT
TACGGCTTGG GCACACCCGA CAACCCCGTG TTCACCGACA TGCACGAAGC CTCGTCACTC
GTGGTCGGTT CGACGCTGTT GGGGGCGCGA TGCATCGCGG AGGGTAAGGC GCGAAGGGCG
GTGAACATCG CGGGCGGCCT GCATCACGCG ATGCGGGACC GTGCCTCGGG GTTCTGCGTC
TACAACGACT GTGTCGTGGC GATCTCCTGG CTGCTCGACC ACGGTTTCGA CCGCATCGCC
TACATCGACA CCGACGTGCA CCACGGTGAC GGCGTGCAAG CCGCCTTCTA CGGTGATCCG
CGCGTGCTCA CCGTCTCGTT GCATCAACAT CCGTTCACGT TGTTTCCCGG CACGGGCTAC
TCGGGTGAGA TCGGGGAAGG GGAGGCGGAG GGCAGAGCGG TCAACATCCC CCTGCCGCCG
CAGACCGGGG ATGCGGGATG GTTGCGGGCT TTCCACGCCG TGGTGCCGTC GGTGTTGGCG
GCGTTTCGCC CGCAGCTTTT GGTGACGCAA TGCGGTGTGG ACTCGCACGA GGAGGACCCG
CTGGCCGATC TGTCGCTGAC GGTGGACGGG CATCGGGCCA TCTACCGGAC GTTGCGGGAA
CTCGCGGACA CCCATGCCGA AGGGCGATGG TTGGCCGTGG GCGGTGGTGG TTACCAGTTG
ATCCGGGTCG TGCCGCGGTC GTGGACACAT CTGTTGGCGA CGGTGTTGGA TCGGGACGTG
GACCCGAGGA CACCGTTGCC CAGAGCGTGG ACCGAGCAGG TGCTGGCGAT GGCGCCCGGG
GCGGAGGTGC CCACGAGTAT GACCGAGAGT TCAGATGGTG CGGAGCCGGT CTTCTCACGC
TGGGGCGACG GTTCCGGCGA CCCCGTGGAC AGTGCCGTCA GGGATACGCG CCGTGCCGTG
TTCCCGATGT ACGGACTGGA CCCCGACGAT CCGAGGGACT GA
 
Protein sequence
MSSSAVVWDS ALLAYNFGSD HPFNPVRLDL TVRLATALGV LQDVPLLVPD PVQAEELYRA 
HTAEYVEAVK QAPMAGWDVG YGLGTPDNPV FTDMHEASSL VVGSTLLGAR CIAEGKARRA
VNIAGGLHHA MRDRASGFCV YNDCVVAISW LLDHGFDRIA YIDTDVHHGD GVQAAFYGDP
RVLTVSLHQH PFTLFPGTGY SGEIGEGEAE GRAVNIPLPP QTGDAGWLRA FHAVVPSVLA
AFRPQLLVTQ CGVDSHEEDP LADLSLTVDG HRAIYRTLRE LADTHAEGRW LAVGGGGYQL
IRVVPRSWTH LLATVLDRDV DPRTPLPRAW TEQVLAMAPG AEVPTSMTES SDGAEPVFSR
WGDGSGDPVD SAVRDTRRAV FPMYGLDPDD PRD