| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_27460 |
|---|
| Symbol | |
|---|
| ID | 8388070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2964115 |
|---|
| End bp | 2965689 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644976777 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
|---|
| Protein accession | YP_003134554 |
|---|
| Protein GI | 257056722 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.267024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGGGAC GGTCACGCCA GGACAACCAA GCCCGGGTTG TCGTCTCGCC GCCCCGTCCG
CACCTGATCG AACCCGTTCC CCTGACCACG CTCGTCGCGC GCGCCGATGC CCGGCTCGTC
GCGGATCCGG CCGTAGCCGA GTCCGTGAGG GTCACCGGGG CGACGCTGCG GGCGCAGCAC
GTGCTTCCCG GGGATCTGTT CGCCGCCCTG CCCGGTGCGC GGGCCCACGG CGCGGACTTC
ACGGCCGACG CCGTCGCGGG GGGAGCCGTG GCCGTTCTGA CCGACGAGGA GGGCGCCTCC
CGGCCCGCTG TACGTGAGTC GGGGCTGCCC GTGCTCATCC ATCCGGACCC GCGTGGGGTG
CTCGGGTCCG TGGCCGCCTG GATCTACGGC GAACCGTCGC TGACGCTGTC GGTGCTCGGC
ATCACGGGTA CCTCGGGCAA GACGACGACG AGTTACTTCG TGGAGTCGGG TCTGCGTGCC
GCCGGCTATC ACACGGGGCT GATCGGCACG GTGGAGACCC GAATCGGCTC CGAACGCCTG
GCGAGCGCAT TCACGACCCC CGAGGCCCCC GACCTCCAGG CCCTGTTCGC CGACATGGTC
GAGCGCGGGG TCACGCACGT GGCGATGGAG GTGTCCAGCC ACGCCCTGGC TCTGGGGAGG
GTGAACGGCA CACGTTTCAC CGTGGGGGCG TTCACGAACC TGTCCCAAGA CCATTTGGAC
TTCCACCGCG ACATGGAGGA CTACTTCTCC GCCAAGTCGC TGCTGTTCGA CGGCCGTTCC
ACGCACGAGA TCGTCGTGGT CGACAGCGCG TGGGGGCAGG CGCTGGTCAC GCCGAGGACC
GTGACGGTGT CGACCGAGCC CGACAGTGAC GCCGGATGGC GGGCCACCGA CATCACACTC
ACCCCCGGTG GGGAACAGTC GTTCACGCTC CACGCTCCCG ACGGACGCAA GGCGCAGGCG
GTGTTGCCGC TGCCGGGCGA GTTCAACGTG GCCAACGCCG TGCTCGCCGC TGCGATCCTC
GACACGGTCG GGGTCGATCT GGACGCCGTG CTCGAAGGAC TCGCGACGGT GGAGGTGCCC
GGTCGGATGG AGCGCGTCTA CCTCGGGCAG CCGTTCACCG CCGTGGTCGA CTACGCGCAC
AAACCCGCCG CCGTCACACA GGCGTTGCGA GCGTTGCGAG CGCGCACGGA AGGCCGCCTC
ATCACCGTCA TCGGCTCCGG CGGCGACCGT GACACGGCCA AACGCCCCAT GATGGGGGAG
GCCGCCGCCC GGGGTAGCGA CCTGGTGATC GTCACGGACG ACAATCCCCG TAGCGAGGAT
CCCGCGGCCA TCAGGGAGGC GATCCTGGCC GGGGCGCGGG CCGTCGGGCC GGCCGAGGGC
TGTGAGGTGC TGGAAATCGG TGATCGGCGC GAAGCCATCG CCGCGGCGGT GGAACGCGCC
GAGGCGGGTG ACGTCGTCTT CGTGGCGGGC AAGGGCCACG AGAGCGGGCA GGAGGTCGCC
GGCGTCGTCC ATCCGTTCTC TGACCGGGAC GAACTCGAGG CGGCCATTCG GGAAAGGTTC
GGTGTGACGG AATGA
|
|---|
| Protein sequence | MRGRSRQDNQ ARVVVSPPRP HLIEPVPLTT LVARADARLV ADPAVAESVR VTGATLRAQH
VLPGDLFAAL PGARAHGADF TADAVAGGAV AVLTDEEGAS RPAVRESGLP VLIHPDPRGV
LGSVAAWIYG EPSLTLSVLG ITGTSGKTTT SYFVESGLRA AGYHTGLIGT VETRIGSERL
ASAFTTPEAP DLQALFADMV ERGVTHVAME VSSHALALGR VNGTRFTVGA FTNLSQDHLD
FHRDMEDYFS AKSLLFDGRS THEIVVVDSA WGQALVTPRT VTVSTEPDSD AGWRATDITL
TPGGEQSFTL HAPDGRKAQA VLPLPGEFNV ANAVLAAAIL DTVGVDLDAV LEGLATVEVP
GRMERVYLGQ PFTAVVDYAH KPAAVTQALR ALRARTEGRL ITVIGSGGDR DTAKRPMMGE
AAARGSDLVI VTDDNPRSED PAAIREAILA GARAVGPAEG CEVLEIGDRR EAIAAAVERA
EAGDVVFVAG KGHESGQEVA GVVHPFSDRD ELEAAIRERF GVTE
|
|---|
| |