Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_27270 |
Symbol | |
ID | 8388051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2942988 |
End bp | 2943914 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644976758 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_003134535 |
Protein GI | 257056703 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.42777 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.302751 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCAGTC GCATGTTGCC CGTCCCGGAC GGGCTCGACG GGATGCGCGT CGACGTGGGA CTGGCGAAGC TACTGGGACT GTCTCGCACG GTCGTGGCGG AGCTGGCCGC GTCCGGTGAC GTGCTGATCG ACGGCAAAGT CGCGAGCAAG TCCGACAGAC TGACGGCGGG CGACCTACTC GAGGTGACGT TGCCGGAACC GGACACGCCC GCCGAGGTGT CGGCCGAACC CGTGGAGGGA TTGCGGATCC TGCACGAGGA CGACGACATC GTGGTGGTCG ACAAACCCGT CGGTGTCGCG GTGCATCCCA GTCCGGGATG GACCGGACCG ACCGTGGTGG GGGGGCTCGC CGCAGCCGGA CTGCGCATCT CGACGTCGGG TGCGGCCGAA CGGCAGGGCG TGGTACATCG GCTGGACGCC GGCACTACGG GAGTGATGGT GGTGGCCAAG AGCGAGCATG CGTACTCGGT GCTGAAGCGG GCGTTCAAGG AGCGCACCGT GTCGAAGGGG TACCACGCAC TGGTCCAGGG CCATCCTGAT CCGACGCGGG GCACGATCGA CGCCCCCATC GACCGACATC CTCGGTACGA CTACAAATTC GCCGTCGTGA CGGGTGGCAA GCCCTCGATC ACCCACTACG AGGTGATCGA GGCGTTCCGT GCGGCGTCGT TGGTGGACGT GCAACTGGAA ACCGGCCGCA CTCACCAGAT CCGTGTGCAC TTCTCCGCGA TGCGGCATCC GTGCGTCGGT GACCTCACCT ACGGCGCCGA CCCCGTACTG GCCCGCCGGC TCGGCCTGAC GCGACAGTGG TTGCACGCGC GCACACTGGG TTTCGCGCAC CCCGCCGATG GTCGATGGGT CGAGTTCACC AGTGAGTACC CGGCCGACCT CGCCGCCGCG TTGGACATCC TGCGCGCGGA GTCGTGA
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Protein sequence | MSSRMLPVPD GLDGMRVDVG LAKLLGLSRT VVAELAASGD VLIDGKVASK SDRLTAGDLL EVTLPEPDTP AEVSAEPVEG LRILHEDDDI VVVDKPVGVA VHPSPGWTGP TVVGGLAAAG LRISTSGAAE RQGVVHRLDA GTTGVMVVAK SEHAYSVLKR AFKERTVSKG YHALVQGHPD PTRGTIDAPI DRHPRYDYKF AVVTGGKPSI THYEVIEAFR AASLVDVQLE TGRTHQIRVH FSAMRHPCVG DLTYGADPVL ARRLGLTRQW LHARTLGFAH PADGRWVEFT SEYPADLAAA LDILRAES
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