Gene Svir_27270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_27270 
Symbol 
ID8388051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2942988 
End bp2943914 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content68% 
IMG OID644976758 
Productribosomal large subunit pseudouridine synthase D 
Protein accessionYP_003134535 
Protein GI257056703 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.42777 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.302751 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCAGTC GCATGTTGCC CGTCCCGGAC GGGCTCGACG GGATGCGCGT CGACGTGGGA 
CTGGCGAAGC TACTGGGACT GTCTCGCACG GTCGTGGCGG AGCTGGCCGC GTCCGGTGAC
GTGCTGATCG ACGGCAAAGT CGCGAGCAAG TCCGACAGAC TGACGGCGGG CGACCTACTC
GAGGTGACGT TGCCGGAACC GGACACGCCC GCCGAGGTGT CGGCCGAACC CGTGGAGGGA
TTGCGGATCC TGCACGAGGA CGACGACATC GTGGTGGTCG ACAAACCCGT CGGTGTCGCG
GTGCATCCCA GTCCGGGATG GACCGGACCG ACCGTGGTGG GGGGGCTCGC CGCAGCCGGA
CTGCGCATCT CGACGTCGGG TGCGGCCGAA CGGCAGGGCG TGGTACATCG GCTGGACGCC
GGCACTACGG GAGTGATGGT GGTGGCCAAG AGCGAGCATG CGTACTCGGT GCTGAAGCGG
GCGTTCAAGG AGCGCACCGT GTCGAAGGGG TACCACGCAC TGGTCCAGGG CCATCCTGAT
CCGACGCGGG GCACGATCGA CGCCCCCATC GACCGACATC CTCGGTACGA CTACAAATTC
GCCGTCGTGA CGGGTGGCAA GCCCTCGATC ACCCACTACG AGGTGATCGA GGCGTTCCGT
GCGGCGTCGT TGGTGGACGT GCAACTGGAA ACCGGCCGCA CTCACCAGAT CCGTGTGCAC
TTCTCCGCGA TGCGGCATCC GTGCGTCGGT GACCTCACCT ACGGCGCCGA CCCCGTACTG
GCCCGCCGGC TCGGCCTGAC GCGACAGTGG TTGCACGCGC GCACACTGGG TTTCGCGCAC
CCCGCCGATG GTCGATGGGT CGAGTTCACC AGTGAGTACC CGGCCGACCT CGCCGCCGCG
TTGGACATCC TGCGCGCGGA GTCGTGA
 
Protein sequence
MSSRMLPVPD GLDGMRVDVG LAKLLGLSRT VVAELAASGD VLIDGKVASK SDRLTAGDLL 
EVTLPEPDTP AEVSAEPVEG LRILHEDDDI VVVDKPVGVA VHPSPGWTGP TVVGGLAAAG
LRISTSGAAE RQGVVHRLDA GTTGVMVVAK SEHAYSVLKR AFKERTVSKG YHALVQGHPD
PTRGTIDAPI DRHPRYDYKF AVVTGGKPSI THYEVIEAFR AASLVDVQLE TGRTHQIRVH
FSAMRHPCVG DLTYGADPVL ARRLGLTRQW LHARTLGFAH PADGRWVEFT SEYPADLAAA
LDILRAES