| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_26580 |
|---|
| Symbol | |
|---|
| ID | 8387982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2865784 |
|---|
| End bp | 2866401 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976696 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003134473 |
|---|
| Protein GI | 257056641 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0994293 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGTA CACCTCCGAA CCGACCCGCC AAACGGGGCA GGCCGGGCTA CGACCTGGAG
ACGGTGCTCG GGGTGGCGGT CAAGCTCTTC AACGAGCGCG GCTACGACGG CACGAGCATG
GAGGACCTCT CCCGCAAGCT CGGCATCACC AAGTCGGCCA TCTACCACCA CGTGCCGAGC
AAGCAGGAGC TGCTGCGGTT GGCCGTCAAC CGGGGCTTGG ACGGCCTGTT CGCCGAGGTC
GACAAGCTCG ACGAGGTCGA GGGACACGCG ATCGACAAAC TCGAGTACCT CGTGCGCGCG
AGCGTGAGGG TGTTGGTCGA GCAGTTGCCG TTCGTGACGT TGCTGCTACG GGTGCGGGGC
AACACGAAGG TGGAGCGGGA CGCGCTGGCC CGGCGCCGGG AGTTCGACCG GATCGTCTCC
GAATTGGTCA GCAAGGCCGC CGCGGACGGT GACCTGCGCC CCGACGTCGA TCCGGCGACC
GCCGCTCGGT TGTTGTTCGG CATGGTCAAC TCTCTGGTCG AGTGGTACCG GCCGCGTGGT
GGGGTCGGGG CCGACGCGTT GGCCGACACC GTCGTCGCCG TGGCGTTCGA CGGGTTGCGA
GTGCGCGAAA AGGACTGA
|
|---|
| Protein sequence | MTGTPPNRPA KRGRPGYDLE TVLGVAVKLF NERGYDGTSM EDLSRKLGIT KSAIYHHVPS
KQELLRLAVN RGLDGLFAEV DKLDEVEGHA IDKLEYLVRA SVRVLVEQLP FVTLLLRVRG
NTKVERDALA RRREFDRIVS ELVSKAAADG DLRPDVDPAT AARLLFGMVN SLVEWYRPRG
GVGADALADT VVAVAFDGLR VREKD
|
|---|
| |