Gene Svir_25250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_25250 
Symbol 
ID8387849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2719820 
End bp2720845 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content69% 
IMG OID644976565 
Productdihydrodipicolinate synthase 
Protein accessionYP_003134346 
Protein GI257056514 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR00674] dihydrodipicolinate synthase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATCG CACCGCCCAC CCCACCCACG GCCGCTCCGG GACGTCCCTT CGGCCGTGTG 
CTCACCGCCA TGGTCACGCC GTTCACCGCG GAGGGCGCGG TGGACCTGAA GCGGGCTCAG
GAGCTCGCAA CACACCTGGT GGATCTGGGT AACGATGGTC TGGTCGTCAA TGGCACCACG
GGTGAAAGCC CCACGACGAG CGACGCGGAG AAAACCGACA TGGTCCGGGC CGTCGTGGAG
GCCGTCGGTG ACCGTGCCAC CGTCGTGGCG GGCGCGGGCA CGTACGACAC CGCGCACAGC
GTGGAGCTCG CTCGCCGGGC GGAGCAGGCC GGTGCCCACG GTCTGCTCGT CGTGACGCCG
TACTACTCGC GCCCCACCCA GGCCGGTCTG TTCGCTCACT TCACCACGGT CGCGGACGCC
ACCGAGCTGC CGGTGATGCT GTACGACATC CCGCCCCGCT CGATCGTGCC CATCGAGGTG
GATACCCTGC GCAGGCTCGC CGAACATCCG CGTATCCTCG CCGTCAAGGA CGCCAAGGGC
GACCTGTTGG CGGGGAGCGA GGTCATCGCC AACACCCACC TCGCGTACTA CTCCGGCGAC
GACGGGCTCA ACCTCCCGTG GTTGTCGGTC GGCGCGACCG GCGTGGTCAG CGTCATCGGC
CACGTCGTGG CCGGGCGGAT CCGCGCGATG ATCGATGCCT ACGAAAGCGG CGACACCTCC
ACCGCCCGGA CCAATCACCG TGGCATGATC CCGGTGTACC GCGCGTTCTC GCGCGTCGGT
GGCGTGGTGT TTGCTAAAAC GGCGTTGCGG CTGCGCGGTA TCGACGCGGG GGACCCGCGG
CTACCGATCG TGCCCGCCAC CGAGGACCAG GTCCGGGCCA TCGCGGACGA CCTCACGCAG
GCGGGGGTGC CGCTGGAGAG TTCCTCCGCG GACGACTGGG CGGGTCCACG TGTGGCCCAG
GCCGATTCGG CGGCCGCCTA CGTCGCACCT ACCACTCACA CGAGCGTTGG GACGATTCAT
CGGTGA
 
Protein sequence
MSIAPPTPPT AAPGRPFGRV LTAMVTPFTA EGAVDLKRAQ ELATHLVDLG NDGLVVNGTT 
GESPTTSDAE KTDMVRAVVE AVGDRATVVA GAGTYDTAHS VELARRAEQA GAHGLLVVTP
YYSRPTQAGL FAHFTTVADA TELPVMLYDI PPRSIVPIEV DTLRRLAEHP RILAVKDAKG
DLLAGSEVIA NTHLAYYSGD DGLNLPWLSV GATGVVSVIG HVVAGRIRAM IDAYESGDTS
TARTNHRGMI PVYRAFSRVG GVVFAKTALR LRGIDAGDPR LPIVPATEDQ VRAIADDLTQ
AGVPLESSSA DDWAGPRVAQ ADSAAAYVAP TTHTSVGTIH R