| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24330 |
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| Symbol | |
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| ID | 8387757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2622506 |
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| End bp | 2623825 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644976473 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_003134254 |
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| Protein GI | 257056422 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.134736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACGAAA CGGCCACGCC GGAGACGAAG TCGTCGGGTC GTAAGACGGC CGCAAAGAAG
GCTCCCGCGA AGTCCGCGAA GACCACCCGG ACGCGCAAGA CCACCACCAA GTCGGACAAG
GCCAAGACGA CGACTCGGTC GAAGGCCAGC AAGAGCACCA GCAAGGCCAA GAGCAAGAAG
TCCGCCGAGC TGGACGAGGG CTTCGACAGT CCGGAGCTCG AGGACGTCGA CCTGTCCGAC
CTCGACGTCG ACGCCGTGGA AGTGGACGTC GTCGACGCGA CCGTCACCGA GGACACCGAC
GAGTCCGACG AGGAGTCCGA CGCCAACGAC CCGGACTTCG TGTGGGACGA GGAGGAGTCC
GAGGCTCTGC GTCAGGCGCG TAAGGATGCT GAGCTCACCG CATCCGCCGA CTCGGTGCGG
GCCTACCTGA AGCAGATCGG TAAGGTCGCG CTGCTCAACG CCGAGGAGGA GGTCGAGCTC
GCCAAGCGCA TCGAGGCCGG CCTTTACGCC GCCGAGCGCC TGCGGATCGC CGAGGAGGAG
GGCGAGAAGC TCTCCACCCA GATGCGCCGC GACCTGAAGT GGATCGTGCG CGACGGGGAG
CGGGCCAAGA GCCACCTGCT CGAGGCGAAC CTCCGGCTCG TGGTGTCGCT GGCCAAGCGC
TACACCGGGC GCGGCATGGC GTTTTTGGAC CTCATCCAGG AGGGCAACCT GGGCCTGATC
CGCGCGGTGG AGAAGTTCGA CTACACCAAG GGCTTCAAGT TCTCCACCTA CGCGACGTGG
TGGATCCGCC AGGCCATCAC CAGGGCCATG GCCGACCAGG CCCGCACCAT CCGCATCCCG
GTGCACATGG TGGAGGTCAT CAACAAGCTC GGCCGGATCC AGCGCGAACT GCTGCAGGAC
CTGGGCCGCG AACCCACTCC GGAAGAACTC GCCAAGGAGA TGGACATCTC CCCGGAGAAG
GTCCTGGAGA TCCAGCAGTA CGCCCGGGAG CCGATCTCGT TGGACCAGAC GATCGGCGAC
GAGGGCGACT CGCAGCTGGG TGACTTCATC GAGGACAGCG AGGCCGTGGT GGCCGTGGAC
GCGGTGTCGT TCACGTTGCT GCAGGATCAG CTGCAGTCGG TGCTGCAGAC GCTGTCCGAA
CGTGAGGCCG GTGTGGTGCG GTTGCGCTTC GGTCTCACCG ACGGTCAGCC TCGCACGCTG
GACGAGATCG GCCAGGTGTA CGGCGTCACA CGGGAACGCA TCCGGCAGAT CGAGTCCAAG
ACCATGTCGA AGTTGCGCCA CCCGTCCCGC TCGCAGGTCC TGCGGGACTA CCTGGACTAG
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| Protein sequence | MDETATPETK SSGRKTAAKK APAKSAKTTR TRKTTTKSDK AKTTTRSKAS KSTSKAKSKK
SAELDEGFDS PELEDVDLSD LDVDAVEVDV VDATVTEDTD ESDEESDAND PDFVWDEEES
EALRQARKDA ELTASADSVR AYLKQIGKVA LLNAEEEVEL AKRIEAGLYA AERLRIAEEE
GEKLSTQMRR DLKWIVRDGE RAKSHLLEAN LRLVVSLAKR YTGRGMAFLD LIQEGNLGLI
RAVEKFDYTK GFKFSTYATW WIRQAITRAM ADQARTIRIP VHMVEVINKL GRIQRELLQD
LGREPTPEEL AKEMDISPEK VLEIQQYARE PISLDQTIGD EGDSQLGDFI EDSEAVVAVD
AVSFTLLQDQ LQSVLQTLSE REAGVVRLRF GLTDGQPRTL DEIGQVYGVT RERIRQIESK
TMSKLRHPSR SQVLRDYLD
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