| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24170 |
|---|
| Symbol | |
|---|
| ID | 8387741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2607788 |
|---|
| End bp | 2608504 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644976458 |
|---|
| Product | transcriptional regulator, GntR family |
|---|
| Protein accession | YP_003134239 |
|---|
| Protein GI | 257056407 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.125788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0229036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTGG AATCCGAGGC TGAGGTGGAC GTCCTGCACA ACACCGTGCT GGACACCATT
GGCTTGGAGA TCACCAGCGG TGAGCTGGCC TGCGGGGACG TACTCACCCT GGATCGCATT
CAGCAGCGGT TCGGGGTCTC CCGTACCGTC GCGCGGGAGA CCATGCGCGT GCTGGAGTCC
ATGGGACTCG TCCGCTCGCG TAGACGGGTC GGCATCACCG TGCAGCCACG ATCGAACTGG
AACGTGTTCG ACCCGAGGGT CATCTGGTGG CGCCTCGCGG GTTCCGGACG CAACGAACAA
CTCCGGTCGC TCACCGAATT GCGGATCGCC GTGGAACCGC TGGCCGCCGC AGCGGCGGCG
CGCAGCGCGT CGGCCGCAGA ACGCGCCGAG ATCGTCGAAC TCGCCGCCGA CATGCGCACC
CTCGGGGAGG CGGGCAAGCT CGACGAGTTC ATGGAGTACG ACGTCGCCTT CCACACGTTG
CTGCTGCGTT CGAGCGGCAA CGAGATGTTC GGCGCTCTCT CCGACGTGGT GGCGGTGGTG
CTGCGGGGTC GCACCCAACT CGGCCTGATG CCCGACCAGC CCGTTCCCGA AGCGCTCGAC
CTGCACGAAC GAGTCGCGGT GTCCGTCGCG CGGGGTGCTT CCGATGATGC CGAGGCGGCC
ATGGCCGAGC TGCTCGCCGA GGTTCGTGAC GCCATGCTCC CCCTCTGGCG CCGCTGA
|
|---|
| Protein sequence | MSVESEAEVD VLHNTVLDTI GLEITSGELA CGDVLTLDRI QQRFGVSRTV ARETMRVLES
MGLVRSRRRV GITVQPRSNW NVFDPRVIWW RLAGSGRNEQ LRSLTELRIA VEPLAAAAAA
RSASAAERAE IVELAADMRT LGEAGKLDEF MEYDVAFHTL LLRSSGNEMF GALSDVVAVV
LRGRTQLGLM PDQPVPEALD LHERVAVSVA RGASDDAEAA MAELLAEVRD AMLPLWRR
|
|---|
| |