| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24150 |
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| Symbol | |
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| ID | 8387739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 2604600 |
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| End bp | 2606537 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644976457 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003134238 |
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| Protein GI | 257056406 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00848147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0118105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGTTGC TGGAGTCCGT GCACGGGCCG GCCGACCTCA AGCGGATGGA TCACGACCAG
CTGAGGGTGC TGGCCGAGGA GATCAGGGAT TTCCTCGTGG AGAAGGTGTG CAGGACAGGC
GGTCATCTCG GCCCCAACCT CGGTGTTGTC GAGCTCACGC TCGCCTTGCA CCGCGTGTTC
GATTCACCGA AGGACGCGCT GCTGTTCGAC GTCGGTCACC AGTCGTACGT GCACAAGATC
GTCACGGGTC GGCACCGCGA CTTCGATCGA CTGCGCCAGC TCGGGGGCAT CTCCGGCTAC
CCCGCCCGCG CGGAGAGCGA ACACGACATC ATCGAGAACA GCCACGCCTC CACGGCCTTG
TCGTACGCCG ACGGGCTGGC AAGGGCGTAT CAGCTCGCAG GCGGTGGCCG ACACGCTGTC
GCGATCGTCG GTGACGGTGC CCTGACCGGC GGTATGTGCT GGGAGGCACT CAACAACATC
GCTGCCGACC CCGAACGCCC CGTGGTCATC GTCGTCAACG ACAACGGCCG TTCGTATTCC
CCGACCATCG GTGGCTTCGC CGAACACCTC GCCGCGCTGC GCCTGCGCCG CGGCTACGAG
CGCCTGCTCG ACGGTGGGAA GGAACTGCTG CAGAACACCC CCGTGGTGGG CAAGCCGCTC
TACACGGCCC TGCACGCGGC CAAGGCCGGT ATCAAGGACG CGCTCAGCCC CCAGGTGATG
TTCTCCGACC TCGGCCTGAA GTACATCGGC CCCGTGGACG GTCACGACCT TCCGGCGTTG
GAGAAGGCGC TGCTCAACGC CAAGGCGTTC GGCGGACCGG TGATCGTGCA CGCTGTCACC
CAGAAGGGGC ACGGCTACCC GCCCGCGGTC AACCACAAGG CCGACCAGAT GCACCAGACC
GACCCCGTCG ATCCGCAGAC CGGCAAACCG CCGGTCAAGG GGCCGAGCTG GACGTCCGTG
TTCGGCGACG AACTCGTCAA GATCGGCGCC GAACGGCAGG ACGTGGTGGC GATCACGGCG
GCCATGCTGC GCTCCACAGG ACTGCAGAAG TTCGCAGACG CCTTCCCGGA CCGGTGCATC
GACGTCGGTA TCGCTGAACA GCACGCCGTC ACGTCGGCCG CGGGACTGGC CATGGGGGGT
CTGCACCCTG TGGTGGCCGT GTACTCCACG TTCCTCAACC GTGCCTTCGA CCAGGTTCTC
CTGGACGTGG CGCTGCACCG GCAGCCGGTG ACGCTCGTGC TCGACCGCGC GGGGATCACC
GGGCCGGACG GGCCGAGCCA CCACGGCATG TGGGATCTGT CCCTGCTCGG CATGGTGCCG
GGCATGCGCG TGGCCGCGCC CCGGGACGCC CAGACGTTGC GCGAGGAACT GCGTGAGGCG
GTCGCCGTGT CCGACGGGCC CACCGCGCTG CGCTTCTCCA GGGGCAGCGT CGTGGACTCG
GTGCCCGCGG TGGACCGCCT CGGATGCGTG GACGTGCTGC GTCAGGCGAA CGACGAGGAC
GTGCTTCTGG TGGCCGTGGG CGCCTTCGGT CAGCTCGGTC TCGCCGCCGC GGACCGACTC
GCCGACCAGG GCATCGGTGT CACCGTCGTC GACCCGCGGT GGGTGTTGCC GGTGCCGGAG
GAGCTGGTGG ACCTGGCGGC GTCGTACCGA CTCGTCGTCA CGTTGGAGGA CAGCGGCCGG
CACGGTGGTT TCGGCTCCGC ACTGGCGACC GCCCTGCGTG ACGCGGACTG TGACGTGCCA
CTGCGGGATC TGGCCGTGCC CCAGCAGTTC CTCGAACACG GCACCCGGGA GGAAGTGTTG
GCGAGCATCG GGCTCACGGC ACAGGACGTG GCGCGCAAGG TCACCGAGTG GGCCGCGGGA
CGGCTCGGCG ACAGCGTGCA GGAGTCGGAG GCCGCCGAGG GTGCGGCGGG AAAGGCGGTT
GACGCGTCTC ACGACTGA
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| Protein sequence | MTLLESVHGP ADLKRMDHDQ LRVLAEEIRD FLVEKVCRTG GHLGPNLGVV ELTLALHRVF
DSPKDALLFD VGHQSYVHKI VTGRHRDFDR LRQLGGISGY PARAESEHDI IENSHASTAL
SYADGLARAY QLAGGGRHAV AIVGDGALTG GMCWEALNNI AADPERPVVI VVNDNGRSYS
PTIGGFAEHL AALRLRRGYE RLLDGGKELL QNTPVVGKPL YTALHAAKAG IKDALSPQVM
FSDLGLKYIG PVDGHDLPAL EKALLNAKAF GGPVIVHAVT QKGHGYPPAV NHKADQMHQT
DPVDPQTGKP PVKGPSWTSV FGDELVKIGA ERQDVVAITA AMLRSTGLQK FADAFPDRCI
DVGIAEQHAV TSAAGLAMGG LHPVVAVYST FLNRAFDQVL LDVALHRQPV TLVLDRAGIT
GPDGPSHHGM WDLSLLGMVP GMRVAAPRDA QTLREELREA VAVSDGPTAL RFSRGSVVDS
VPAVDRLGCV DVLRQANDED VLLVAVGAFG QLGLAAADRL ADQGIGVTVV DPRWVLPVPE
ELVDLAASYR LVVTLEDSGR HGGFGSALAT ALRDADCDVP LRDLAVPQQF LEHGTREEVL
ASIGLTAQDV ARKVTEWAAG RLGDSVQESE AAEGAAGKAV DASHD
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