Gene Svir_23910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_23910 
Symbol 
ID8387715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2578049 
End bp2579257 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content62% 
IMG OID644976434 
Productsite-specific recombinase XerD 
Protein accessionYP_003134216 
Protein GI257056384 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.075478 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.15395 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGCGAG TCTGGATCTA CGACCGGACC AAGAAGGCTA AGTACCGTGA AGCGGTCAAG 
AAGGCCAAAA GCCTTGGTCG TAGGCCGCCG GCACGTTGGG AGGTCATGTA CTACGACCAG
ACCGGCAAGC TGCGCTCCGA GGTTGCTGCC ACCAAGGCTC GGGCAGAGCA ACGGCGTACC
GAGCTGGAAG CTGCACTTTC GACAGACACC TATGTTGACC CTACAACGGC GAAGGTGTCG
TTCGCTGAAG TGGCTGACAA GTGGCTTGAG TCTCGGCATG ATCTTCGGCC GTCGACTTGG
TGGAAGTACC GCGGTCTGCT GGACACTCAT GTCAACGTGC GATGGGGTGA TGTGCAGCTT
CGTGCGATCA GGAGCGAGGA CATCGCTGCT TGGCTGGGAT CGTTGTTGAA GTCGCGGACT
GAGGGTGGCA GCGGTCTTGG TCCTTCGCAG GCCCGACATG CGTTCCGGGT GTTGTCGATG
GTGCTCGATT GGTGCGTTCC TGCGAAGCTA CTGCGGAACC CTGCTGAGGG GGTCAAGCTG
CCGGTTCGCC CGGAAACGGA ACATGTCTAT TTGAGCTTCG AGCAGGTCGA GCGTCTGGCT
AATGCAGCGG GAGACCTCCG CACGAAGTAC GGCCGTCCGA CTGCCTCGGC CTCCGTCAAC
AGGGCGCTGA TCCTGCTGTT GGCTTACACC GGTCTCCGAT GGGGTGAAGC TGCAGCGCTC
CGAGTGGGGC GTGTCGATTT GGTCAAGCGG CGAATACGGG TCGTGAGCAC GTTTTACGAG
CTCAATGGGG TGCAGCATGA GGGTCCGCCG AAGAGCGGCA AGCATCGGAC GGTGGCGATT
CCACCGTCGT TGGTGCCGGA GTTGAAACAG GTCATTGGGG GCCGTGGGGA TCACGAGCTG
GTGTTCACTA CAGCGCGCGG GGCGTCGTTA CGGGCGAACA ACTGGCGGGT GCGGGAGTTC
AACCCCGCTG TGAAGTTGGC CAAGCTCGAT GGGCTCGGTC TCACTCCGCA CAAGCTGCGA
CATACGGCCG CATCACTCGC CATCGCAGCG GGGGCAGATG TGAAAGTTCT TCAACACATG
CTCGGTCATG CCGACGCGGC GATGACGCTC AACATCTACG GGCACCTGTT CCCCGACCGG
CTCGACGAGG TCGCTGACAC GCTCGATGTT CGACGGCGCG AGGTACTGGG CAAGCCCTCG
GCAAGCTGA
 
Protein sequence
MARVWIYDRT KKAKYREAVK KAKSLGRRPP ARWEVMYYDQ TGKLRSEVAA TKARAEQRRT 
ELEAALSTDT YVDPTTAKVS FAEVADKWLE SRHDLRPSTW WKYRGLLDTH VNVRWGDVQL
RAIRSEDIAA WLGSLLKSRT EGGSGLGPSQ ARHAFRVLSM VLDWCVPAKL LRNPAEGVKL
PVRPETEHVY LSFEQVERLA NAAGDLRTKY GRPTASASVN RALILLLAYT GLRWGEAAAL
RVGRVDLVKR RIRVVSTFYE LNGVQHEGPP KSGKHRTVAI PPSLVPELKQ VIGGRGDHEL
VFTTARGASL RANNWRVREF NPAVKLAKLD GLGLTPHKLR HTAASLAIAA GADVKVLQHM
LGHADAAMTL NIYGHLFPDR LDEVADTLDV RRREVLGKPS AS