| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23110 |
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| Symbol | |
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| ID | 8387635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 2487372 |
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| End bp | 2488238 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644976364 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_003134146 |
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| Protein GI | 257056314 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.246209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.237195 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGCCGG AGCAGGCATA CGACGACTGT GTGCGCATCA CCCGTGAACA GGCCCGCAAT
TTCGCCTACG GCATCAGGTT GCTGCCCGGA CCCAAACGCA ACGCGCTCAG CGCGGTCTAC
GCCTTCGCCC GTCGGATCGA CGACATCGGT GACGGCGATC TCAGTCGAGA GGTCAAACTC
AAGGGGTTGG AGACCGCCCG CGCCGATCTG CGCGCGATGG AGGCCGGAAC CACCGACACC
GACGATCCCG TCCTCATCGC CCTCGCGGAC GCGGCGCGGC GCTTCGAGCT GCCGTTGGAC
GCGTTCGACG AACTGATCGA CGGTTGTCGC GCTGATGTGT TGGGGGTCGG CTATCCGACG
TTCACGTCGC TGGAGCGGTA CTGCCGGTGT GTCGCCGGTT CGGTCGGGCG ACTGTCGTTG
GCGGTCTTCG GCAGTCCGGA CCGGGATCGA TACGAGCCGA TCGCCGACGA TCTGGGCGTC
GCGCTACAGC TGACCAACAT CCTGCGCGAC GTCGTCGAGG ACCTCGACAA CGGTCGGGTG
TATCTGCCCG CCGACGAGCT CAAGCGGTTC GGGTGCACAC TCGAGCGGGA CGACAGCGGG
GCGTTCGTCG ACGACGCGGA CGACCTCGCG GCGTTGTTGG AGTTCCAGGC GGTACGGGCG
CAGGAATGGT ACGAGCGGGG ACTGGCCCTG CTCGACGTCC TCGACCGACG CAGCCGAGCA
TGCTGCGCGG CGATGGCGGG GATCTATCAC CGGCTGCTCA CTCGGATGGC GCTACGACCG
GACCTGGTGT TGCGGGGCCG GACCAGTCTG CCGTCCTGGG AGAAGGCCCT CGTGGCGGGC
ATGGCACTTG CGGGAGGCAC ACCGTGA
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| Protein sequence | MRPEQAYDDC VRITREQARN FAYGIRLLPG PKRNALSAVY AFARRIDDIG DGDLSREVKL
KGLETARADL RAMEAGTTDT DDPVLIALAD AARRFELPLD AFDELIDGCR ADVLGVGYPT
FTSLERYCRC VAGSVGRLSL AVFGSPDRDR YEPIADDLGV ALQLTNILRD VVEDLDNGRV
YLPADELKRF GCTLERDDSG AFVDDADDLA ALLEFQAVRA QEWYERGLAL LDVLDRRSRA
CCAAMAGIYH RLLTRMALRP DLVLRGRTSL PSWEKALVAG MALAGGTP
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