| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23080 |
|---|
| Symbol | |
|---|
| ID | 8387632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2483073 |
|---|
| End bp | 2484995 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976361 |
|---|
| Product | squalene-hopene cyclase |
|---|
| Protein accession | YP_003134143 |
|---|
| Protein GI | 257056311 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1657] Squalene cyclase |
|---|
| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.813325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.224628 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG TGTTGACCCG TGAGCTGTCC CCGAACTCGA CGCGGGACAG GGTGCGAAGC
TGCGTTTCCT CCGCCCGGCA GTACTTGCTG TCGCTGCAGC ACGAGGAGGG CTGGTGGAAA
GGTGAGCTGG ACACGAACGT GACGATGGAG GCCGAGGACC TGCTGCTGCG GCAGTTCCTC
GGTATCTCCG ACGAACAGGT CACACAGGAG ACCGCGCGCT GGATCAGGTC GTGTCAACGG
GAGGACGGAA CGTGGGCGAC CTTCCACGGC GGTCCCCCCG ACCTGTCCAC GACCGTGGAG
GCCTACGTCG CGTTGCGCCT GGCAGGTGAT GCGATGGACG CCGCGCACCT GCGCAAGGCG
CGTGAATACA TCTTGGACAG TGGGGGGATC GAGTCCACAC GGGTGTTCAC ACGGATCTGG
CTGGCACTGT TCGGGGAATG GCCGTGGAGC AGATTGCCGG TGCTGCCACC GGAGATGATG
CTGCTGCCCG ACTGGTTCCC GCTGAACATC TACGACTGGG CGAGCTGGGC CAGACAAACG
GTGGTGCCGT TGACGATCGT CGGTTCCCTC CGGCCCACCA GGGATCTCGG ATTCAGCGTC
CGGGAGTTGC GTACCGGGAT CCAGCGCCGG GATCTGGAGT CGCCGCTTTC CTGGGCGGGC
GTTTTCCACG GCCTCGACTC GGTGTTGCAC CGTTTGGAGA AGCTGCCTTT GAAGCCCTTG
CGCAAGGTGG CACTGGCACG AGCGGAACAA TGGATCCTCG ACCGACAGGA ATCGGACGGG
GGTTGGGGCG GCATCCAGCC ACCGTGGGTG TATTCGATCC TCGCCCTGCA TCTGCGTGGT
TACCCGTTGG ACCACCCGGT GCTGCGTAAG GCGCTCGACG GGCTGGACGG CTTCACCATC
CGGCACCGCA CCGAGAACGG GTGGATCCGT AAATTGGAGG CCTGCCAGTC GCCGGTGTGG
GACACGGCTC TTGCGATGAC GGCGTTGTTG GACTCCGGAA CACCACCGAA CGACCCGGCG
CTGGTCAGGG CGGCCGACTG GATCCTGCGT CAGGAGATCC GGGTCAGTGG TGACTGGCGG
GTGCGCAGAC CCGCCCTGGA ACCGTCGGGG TGGGCGTTCG AGTTCGCCAA CGACCATTAC
CCCGACACCG ACGACACGGC CGAGGTGGTG CTCGGACTCC AGCGGGTGAG ACACCCCGAG
CCGCACCGGG TGAACGCGGC CGTGGAACGG GCCACCGCGT GGCTCGTGGG CATGCAGTCC
TCGGACGGCG GATGGGGTGC GTTCGACGCC GACAACACGC GAACACTGTG CGAGAAGCTG
CCGTTCTGCG ACTTCGGCGC GGTGATCGAC CCGCCGTCGG CCGACGTGAC GGCGCATATC
GTGGAGATGC TGGCGGCCCG GGGAATGGCC GACAGTGAAT CCGCCAGACG CGGCGTGCGC
TGGTTGTTGG AGCACCAGGA GGTGGACGGT TCCTGGTTCG GTCGTTGGGG AGCCAACCAC
GTCTACGGCA CGGGAGCGGT GGTTCCGGCT CTCGTGGCGT GTGGGATCTC CCCCCAGCAC
GAGGCCGTGC GCGCGGCCGT GCAGTGGCTT GTGGCCCACC AGAACGCCGA CGGCGGTTGG
GGTGAGGACC TGCGTTCCTA TGTCGACCGG ACCTGGGTGG GCCGGGGCAC CTCCACACCG
TCACAGACGG CGTGGGCGTT GTTGGCGCTG CTCGCGGCGG GGGAACGGGG CGAGGTCGTG
CGCCGGGGTG TGGAATGGCT GATGGCCGCA CAGCGGCCCG ACGGTGGTTG GGACGAACCG
CAGTACACCG GCACCGGTTT CCCCGGCGAC TTCTACATCA GCTACCACAT GTACCGGATC
GTCTTCCCGC TCACCGCGTT GGGCCGGTAC CTCGGAAGAG GTGGCGATGT CGGGACGGGC
TGA
|
|---|
| Protein sequence | MTDVLTRELS PNSTRDRVRS CVSSARQYLL SLQHEEGWWK GELDTNVTME AEDLLLRQFL
GISDEQVTQE TARWIRSCQR EDGTWATFHG GPPDLSTTVE AYVALRLAGD AMDAAHLRKA
REYILDSGGI ESTRVFTRIW LALFGEWPWS RLPVLPPEMM LLPDWFPLNI YDWASWARQT
VVPLTIVGSL RPTRDLGFSV RELRTGIQRR DLESPLSWAG VFHGLDSVLH RLEKLPLKPL
RKVALARAEQ WILDRQESDG GWGGIQPPWV YSILALHLRG YPLDHPVLRK ALDGLDGFTI
RHRTENGWIR KLEACQSPVW DTALAMTALL DSGTPPNDPA LVRAADWILR QEIRVSGDWR
VRRPALEPSG WAFEFANDHY PDTDDTAEVV LGLQRVRHPE PHRVNAAVER ATAWLVGMQS
SDGGWGAFDA DNTRTLCEKL PFCDFGAVID PPSADVTAHI VEMLAARGMA DSESARRGVR
WLLEHQEVDG SWFGRWGANH VYGTGAVVPA LVACGISPQH EAVRAAVQWL VAHQNADGGW
GEDLRSYVDR TWVGRGTSTP SQTAWALLAL LAAGERGEVV RRGVEWLMAA QRPDGGWDEP
QYTGTGFPGD FYISYHMYRI VFPLTALGRY LGRGGDVGTG
|
|---|
| |