Gene Svir_22890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_22890 
Symbol 
ID8387613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2461421 
End bp2462323 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content69% 
IMG OID644976342 
Productuniversal stress protein UspA-like protein 
Protein accessionYP_003134124 
Protein GI257056292 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.599041 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.514457 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGTG AGGATGCGAA CGTCGTCGTG GGGGTGGATG GTTCGACGTC GGCGCTCCGG 
GCCACGGCAT GGGCCGCCCA GACCGCGGTG CGCTGGCACC GGCCATTGCT GCTCACGTCC
GTGTTGGACC CGCCCACGCC GTATGGCACC GGGATCGGAT TACGGGCGGA CCGTTTCGTG
GAATTGGAGA CGGAGGGGCG GGAGTGGCTC GATCGGGCAC GCGCCGTGGC GGAGCGGACG
ACCGTCGACC ACCATCACAC CGAGGTCGGA ACCGAACTCG TCGTCGGCGA GGTCTCCTCG
GTGTTGCGCG AGCGTGCGCG GGATGCTTTT CGTGTGGTGG TCGGTGGGGA CCGTCCCGTG
GGGGAGACGG GGACGTCCGC GTCGACGGCC ATGGCGTTGC TGCCGCACGC CGCGTGCCCG
GTGGCGGTGG TGCGGTGGAG TGGCGAGGAT GCCGAACCAC CGCAACACGG TCCGGTCGTG
GTCGGTGTGG ACGGTTCGTC GGCGAGCGCG GAGGCGATGC TCGTGGCGTT CGAGGAGGCG
GCCGTTCTCG ACGCCGTTCT CGTGGCCGTC CACGCCGAGG ACTCGTCCAC CCGACAGCGA
CTTCGGCAAC GAAGTCGCGG TGCTTGGCGT GAGGGGGAGA TCGCCGATCG GATCACGCTC
GCCGAGCGGT TCGCGGATAT GCGGCAGGGG TATCCGGAAG TGACCGTCGA ACCCGTGGTG
ACGCAGGGCA GTGCCACGTC CGCGTTGCTG AAGTACGCCG AGTCGGCGCG GTTACTGGTG
GTCGGCACGA CCGGTCACGG AGAACTCAGC GGCAGGTTGC TCGGTTCCAC GAGTCACGCG
TTGGTGCGTT CCGCGCCGTG TCCGGTGCTC GTCGTGCCCG ACCGGGCCCA CACGTCCGGA
TGA
 
Protein sequence
MTGEDANVVV GVDGSTSALR ATAWAAQTAV RWHRPLLLTS VLDPPTPYGT GIGLRADRFV 
ELETEGREWL DRARAVAERT TVDHHHTEVG TELVVGEVSS VLRERARDAF RVVVGGDRPV
GETGTSASTA MALLPHAACP VAVVRWSGED AEPPQHGPVV VGVDGSSASA EAMLVAFEEA
AVLDAVLVAV HAEDSSTRQR LRQRSRGAWR EGEIADRITL AERFADMRQG YPEVTVEPVV
TQGSATSALL KYAESARLLV VGTTGHGELS GRLLGSTSHA LVRSAPCPVL VVPDRAHTSG