Gene Svir_22550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_22550 
Symbol 
ID8387579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand- 
Start bp2427584 
End bp2428153 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content61% 
IMG OID644976308 
Producthypothetical protein 
Protein accessionYP_003134090 
Protein GI257056258 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0818404 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGTCG ACGAGGGTCC GGTGCGGGCT GTCGGTGGTG AACAAGGGGA GCTGTTTCCC 
GATGTTTCAC TTCCAGACGA GCTGGTTGGC TACCGTGGTC CCGCTGCCTG CCAGATCGCC 
GGGATCACCT ACCGACAGCT GGATTATTGG GCGCGTACCA AACTGGTAGC TCCGAGTATT 
CGCCCAGCCC ATGGTTCAGG TTCTCAACGG CTGTATTCGT TCAAGGACCT TCTGGTTCTC 
AAGATTGTGA AGAGGCTCCT CGATACCGGG GTGTCATTAC AGAACATTCG GGTGGCCGTC 
GAGCACCTTC GAGCACGGGG AGTGCGTGAT CTCGCGCGGG TGACACTGTT CTCGGACGGG 
GCGACGGTCT ACGAGTGCAC ATCGCCGGAG GAGATCGTCG ATCTGCTCCA GGGCGGGCAG 
GGTGTGTTCG GTATCGCGGT GAGTAACGCG ATGCAGGAAA TCAGTGGCAC GCTGCACGAA 
TTCCCCGCCG AGCGCGCTGA CGGCGTGCAG ATCGAACCGA GTGTTCCGGA CGAGCTGTCC 
GAGCGTCGGA AAGCCCGCCG TACCGGTTGA
 
Protein sequence
MVVDEGPVRA VGGEQGELFP DVSLPDELVG YRGPAACQIA GITYRQLDYW ARTKLVAPSI 
RPAHGSGSQR LYSFKDLLVL KIVKRLLDTG VSLQNIRVAV EHLRARGVRD LARVTLFSDG 
ATVYECTSPE EIVDLLQGGQ GVFGIAVSNA MQEISGTLHE FPAERADGVQ IEPSVPDELS 
ERRKARRTG