| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_21930 |
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| Symbol | |
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| ID | 8387517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 2360071 |
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| End bp | 2362827 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644976246 |
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| Product | superfamily II RNA helicase |
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| Protein accession | YP_003134028 |
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| Protein GI | 257056196 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4581] Superfamily II RNA helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0392753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.495503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACTCCT CCACTACATC TCCGAGCCCG GCCGAGGCCT ACGCAGCAGC GCGGCGACGC
AGCCGGTACC CGCAACTCAC TCGATTCGCA GCCGAGGTGT CGTTCGAGTT CGACGACTTC
CAGGTCAGAG GCTGTGAAGC GCTCGAGGAC GGACACGGCG TGCTCGTGTG CGCGCCGACC
GGTGCGGGCA AGACGATCGT CGGCGAGTTC GCCGTCCACC TGGCGCTAGC CGAGGGACGC
AAGTGCTTCT ACACGACCCC GATCAAGGCG CTGTCCAACC AGAAGTACGG CGACCTGGTC
GAGCGCTACG GCTCCGACAT CGTCGGCCTG CTCACCGGTG ACACCTCCAT CAACGGCGGG
GCACAGATCG TGGTGATGAC CACCGAGGTG CTGCGCAACA TGCTGTACGC CGAGTCCACC
ACGCTCGACG ACCTCGGCTA CGTCGTGTTG GACGAGGTGC ACTACCTCGC CGATCGCTTC
CGCGGCGCGG TGTGGGAGGA GGTGATCCTG CACCTGCCCG ACTATGTGCG GGTGGTCGGA
CTGTCGGCGA CCGTCAGCAA CGCTGAGGAG TTCGGGGAGT GGCTGGTCGA GGTCCGCGGT
GACACCACCG TCGTGGTGGA CGAGCACCGG CCCGTGCCGT TGTGGCAGCA CATGCTGGTC
GGTGGACGCT TGTACGACCT GTTCGTCGGG GAGCGCGCCG ACACCGGTGA AGCCAAGCTC
AACCCCCGCC TGCTGCGAGC GGTCGAGGAG GCCGGGCGGA TGCACGTTCC CGCGGGACTG
CGGGGCCGCA GCAGGCGTGG CGCCCCCCAG CGGGGACCGC GCTATCGACC TCCGTCACGC
ACGGAGATCG TCGATCGGCT CGATCGGGCC GGACTGCTAC CCGCGATCGT GTTCATCTTC
TCCCGCGCGG GCTGCGACGC GGCCGTGACT CAGTGCGTGC GTTCGGGGCT GCGCCTCAAC
ACCCCCGACG AGGTCCAGCA GGTGCGACGC ATCGTCGATG AACGCACCGC CGACCTGCCG
CCCAGCGACC TGGAGGTGCT GGGTTACTGG GAATGGCGGG AAGGCCTGGA ACAGGGCATC
GCCGCGCACC ATGCCGGGCT GCTGCCCGCC TTCAAGGAGA CGGTCGAGGA ACTGTTCGTC
CGCGGGCTGG TCAAGGTCGT GTTCGCCACC GAGACGCTCG CCCTGGGCAT CAACATGCCC
GCCCGCACCG TGGTGCTCGA ACGGCTCGTC AAGTACAACG GGGAATCGCA CGTCGATCTC
ACCCCCGGCG AATACACCCA GCTCACCGGT CGTGCCGGGC GACGTGGCAT CGACGTCGAG
GGGCACGCGG TGGTCGTGTG GCAACCGGGG GTGGACCCCA GGCAGGTCGC CGGACTGGCG
TCCACCCGCA CGTATCCGCT GCGCTCGTCG TTCCGTCCCG GCTACAACAT GGCCGTCAAC
CTGGTCGGTC GATTCGGCGC GGTGAAAGCT CGCGAGCTGC TGGAACAGTC GTTCGCCCAG
TTCCAGGCAG ACCGCTCGGT GGTGGGACTG TCCCGGCGCA TCGAACGCAA CACCGAGGCG
CTACGCGGCT ACGCCGACGC CGTCACCGGG GACTTCGACG AGATGCTGTC CTACCTGACG
TTGCGGAAGA AGATCTCCGA ACGGGAGAAG GCGCTCGCCC GGCAGAACAC GGCCGCGCGT
CGGGCCCAGA CCGCGAAGTC CCTGGAGAAG CTCCGGAAAG GTGACGTCAT CGCCGTGCCG
TCGGGTCGCC GGGCGGGACT GGCCGTGGTC ATCGACTCCG GAGTGGACCA ATTCGACGAG
CCACGGCCCC TCGTGGTCAC CGAGGACCGT TGGGCCGGCA CCCTGTCGCT GTCCGACTTC
CCGACCCCCG TGGAACCGTT GGGACGACTG CGGTTGCCCA AACACGTCGA GCTGCGTTCG
CCGAAAACAC GTCGGGACAT CGCCTCGTCG CTGCGGAACA CCGGTATCCG TCCTCCGAAG
CGACAGCGGT GGCGCTCCGA TGCCCATTCC GATCCCGAGT TGGCGGAGTT GCGGCGACAG
TTGCGTGCCC ACCCCGTGCA CGGGATGGCG GACCGCGAGG CCAACCTGCG ATGGGTCGAG
CGTTATCAGC GGTTGGCGGA GGACAACCAG AGGCTCAAAC GCAAGGTCGC GGCCACGACC
CACTCCCTGG CCCGAGCCTT CGACCGCATC CGCCGGTTGT TGATCGAACG TGGCTATCTC
GGTGAGAGCG GGGACGACGT CACCGAGCAC GGACAGCTGC TCGCCCGCCT GTACAGCGAG
TCGGACCTGC TGGCCGCCGA ATGCATCCGG CAGCGTGTCT GGCACGGTCT CGCGCCGGCC
GAGCTCGCCG CCGTCGTCTC CACTTTGGTG TACGAGGCGC GTCGTGACTC CACCGCCGAG
GCCAAGGTGC CTGCGGGCCC GGTCAACAAG GCGTGGCAGG AAACGGTGCG CCTGTGGAGC
GACCTGGTGG AGGACGAGCG ACGGCATCGG TTGGACCCCA CCCGCGAGCC GGACGCTGGA
TTCGCGTGGC CGGTGTACCG GTGGGCACGG GGTGAGTCCT TGGAGAAGGT CCTCACCTCC
GCCGAGGTGA ACGGGCAGGA ATTGTCCGCG GGCGACTTCG TACGGTGGTC CCGGCAGGTG
GTGGACCTGC TCGAACAGAT CAGGGACGTG CTCGGTAAGG AACATCCCGT CGGTGGTGCG
GCCGGGAAGG CGTCCCGATT GCTTCGGCGC GGTGTCGTCG CGGCGGGGGA GCTGTGA
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| Protein sequence | MDSSTTSPSP AEAYAAARRR SRYPQLTRFA AEVSFEFDDF QVRGCEALED GHGVLVCAPT
GAGKTIVGEF AVHLALAEGR KCFYTTPIKA LSNQKYGDLV ERYGSDIVGL LTGDTSINGG
AQIVVMTTEV LRNMLYAEST TLDDLGYVVL DEVHYLADRF RGAVWEEVIL HLPDYVRVVG
LSATVSNAEE FGEWLVEVRG DTTVVVDEHR PVPLWQHMLV GGRLYDLFVG ERADTGEAKL
NPRLLRAVEE AGRMHVPAGL RGRSRRGAPQ RGPRYRPPSR TEIVDRLDRA GLLPAIVFIF
SRAGCDAAVT QCVRSGLRLN TPDEVQQVRR IVDERTADLP PSDLEVLGYW EWREGLEQGI
AAHHAGLLPA FKETVEELFV RGLVKVVFAT ETLALGINMP ARTVVLERLV KYNGESHVDL
TPGEYTQLTG RAGRRGIDVE GHAVVVWQPG VDPRQVAGLA STRTYPLRSS FRPGYNMAVN
LVGRFGAVKA RELLEQSFAQ FQADRSVVGL SRRIERNTEA LRGYADAVTG DFDEMLSYLT
LRKKISEREK ALARQNTAAR RAQTAKSLEK LRKGDVIAVP SGRRAGLAVV IDSGVDQFDE
PRPLVVTEDR WAGTLSLSDF PTPVEPLGRL RLPKHVELRS PKTRRDIASS LRNTGIRPPK
RQRWRSDAHS DPELAELRRQ LRAHPVHGMA DREANLRWVE RYQRLAEDNQ RLKRKVAATT
HSLARAFDRI RRLLIERGYL GESGDDVTEH GQLLARLYSE SDLLAAECIR QRVWHGLAPA
ELAAVVSTLV YEARRDSTAE AKVPAGPVNK AWQETVRLWS DLVEDERRHR LDPTREPDAG
FAWPVYRWAR GESLEKVLTS AEVNGQELSA GDFVRWSRQV VDLLEQIRDV LGKEHPVGGA
AGKASRLLRR GVVAAGEL
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