Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_20760 |
Symbol | |
ID | 8387400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2209708 |
End bp | 2210475 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644976134 |
Product | dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein |
Protein accession | YP_003133916 |
Protein GI | 257056084 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.00301045 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0643774 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGACG ACGGGATCGC GGGCGCGACG GCCATCGTCA CCGGTGCGGG ACGGGGCATC GGTCTGGCCG TGGCACGGGA ATTGCACGCC CGGGGCGCGA CCGTCGCCGC GCTGGACCGC TCCACCGACG AGCTCGCCTC CCACATCGAC CAGCCGCGGT TCACCGCGAT CACCGCTGAC GTCACCGACC CGGACCGGGT CCACGAGGTG GTGTCGCAGG TGGAACACGA CCTCGGCCCG ATCGACATCC TGGTCAACGT CGCCGGGGTC CTCCATCCCG GCGACGTGGT GGACTACTCC GATGAGGACT GGGAGCACAC CTTCGCCGTG AACACCACCG CGGTGTTCAC CGTCTCCCGA GCCGTGACCC GCCTGATGAT CCCCCGCCGT CGCGGGGTCG TCATCACCGT GTCCTCCAAC GCGGCCGGCG TGCCGCGCCG GGGGATGGCC GCCTACGCCG CGTCCAAGGC CGCCGCCACC ATGTTCACCA AGTGCCTCGG TTTGGAACTG GCCGAGTACG GGATCCGTTG CAACGTGGTC GCCCCCGGCT CCACCGACAC CCCGATGCAG CGCAAACTCT GGAACACCGG TGGAGCCGAC GCGGTGATCC GCGGTGATCT GGACGACTTC CGGACGGGCA TCCCGCTGGG CAGGATCGCC GAGCCCGAGG ACATCGCGGC GGCCGTGGTC TTTTTGGCCT CCGACCAGGC CCGGCACATC ACGATGCACG ACCTCTACGT CGACGGCGGC GCGACACTGC GGGCCTAG
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Protein sequence | MRDDGIAGAT AIVTGAGRGI GLAVARELHA RGATVAALDR STDELASHID QPRFTAITAD VTDPDRVHEV VSQVEHDLGP IDILVNVAGV LHPGDVVDYS DEDWEHTFAV NTTAVFTVSR AVTRLMIPRR RGVVITVSSN AAGVPRRGMA AYAASKAAAT MFTKCLGLEL AEYGIRCNVV APGSTDTPMQ RKLWNTGGAD AVIRGDLDDF RTGIPLGRIA EPEDIAAAVV FLASDQARHI TMHDLYVDGG ATLRA
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