Gene Svir_20760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_20760 
Symbol 
ID8387400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2209708 
End bp2210475 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content70% 
IMG OID644976134 
Productdehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein 
Protein accessionYP_003133916 
Protein GI257056084 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.00301045 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0643774 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGACG ACGGGATCGC GGGCGCGACG GCCATCGTCA CCGGTGCGGG ACGGGGCATC 
GGTCTGGCCG TGGCACGGGA ATTGCACGCC CGGGGCGCGA CCGTCGCCGC GCTGGACCGC
TCCACCGACG AGCTCGCCTC CCACATCGAC CAGCCGCGGT TCACCGCGAT CACCGCTGAC
GTCACCGACC CGGACCGGGT CCACGAGGTG GTGTCGCAGG TGGAACACGA CCTCGGCCCG
ATCGACATCC TGGTCAACGT CGCCGGGGTC CTCCATCCCG GCGACGTGGT GGACTACTCC
GATGAGGACT GGGAGCACAC CTTCGCCGTG AACACCACCG CGGTGTTCAC CGTCTCCCGA
GCCGTGACCC GCCTGATGAT CCCCCGCCGT CGCGGGGTCG TCATCACCGT GTCCTCCAAC
GCGGCCGGCG TGCCGCGCCG GGGGATGGCC GCCTACGCCG CGTCCAAGGC CGCCGCCACC
ATGTTCACCA AGTGCCTCGG TTTGGAACTG GCCGAGTACG GGATCCGTTG CAACGTGGTC
GCCCCCGGCT CCACCGACAC CCCGATGCAG CGCAAACTCT GGAACACCGG TGGAGCCGAC
GCGGTGATCC GCGGTGATCT GGACGACTTC CGGACGGGCA TCCCGCTGGG CAGGATCGCC
GAGCCCGAGG ACATCGCGGC GGCCGTGGTC TTTTTGGCCT CCGACCAGGC CCGGCACATC
ACGATGCACG ACCTCTACGT CGACGGCGGC GCGACACTGC GGGCCTAG
 
Protein sequence
MRDDGIAGAT AIVTGAGRGI GLAVARELHA RGATVAALDR STDELASHID QPRFTAITAD 
VTDPDRVHEV VSQVEHDLGP IDILVNVAGV LHPGDVVDYS DEDWEHTFAV NTTAVFTVSR
AVTRLMIPRR RGVVITVSSN AAGVPRRGMA AYAASKAAAT MFTKCLGLEL AEYGIRCNVV
APGSTDTPMQ RKLWNTGGAD AVIRGDLDDF RTGIPLGRIA EPEDIAAAVV FLASDQARHI
TMHDLYVDGG ATLRA