| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_20570 |
|---|
| Symbol | |
|---|
| ID | 8387383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2193631 |
|---|
| End bp | 2194500 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644976117 |
|---|
| Product | Helix-turn-helix protein |
|---|
| Protein accession | YP_003133899 |
|---|
| Protein GI | 257056067 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.936379 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGTCGG CTATCGTGTG GTGCATGTCC GAGACCACCC CGGCGCCGCG TGCCTATGTC
CTTGGCGGCG AGCTGAGGCA CGCTCGCGAG AATGCCGGTA TCGGTGTCCG CCAACTCGCC
GGGAAGCTGG AGCTTTCGCA TTCGGTGATC GTTCGCTGGG AGAAAGGCGA GCGGCTACCG
AGTCCCGAGA GCGTGTCGGC GGTCGCGGTC GCGCTCGGGT TGTCGGCCGC TGAACGTGAT
CGGCTTGTAC AGGCCGCGAA GGACGCCGCG TCTGAGCCAG TCAACTCGGT CTCCATCGGA
GTGGCGGGCA TGGCGGACGC GTTGACCACG CTGATGGGTT TCGAGCGTGC TGCGACGTCG
ATTACTGACG TGTCGCCGCT GCTTGTGCCG GGACTGCTCC AGACTGCTGA CTACGCGCGC
ATGGTCATCG GGGATTCACC CGACGCGGAA GCGCGGGTTG CCGTTCGGCT CGGTCGGCGT
GACGTCATCA CCCGCGAGCG AAATCCGGTG CAGTACACCG CGTACATTCT GGAATCGGTG
TTGTACCAAC AGGTAGGTGA GTCATTGCTC GTCGACCAGC TGCGGATGAT GCGCAAGCTC
GCCGACCTGC CCAACGTGTG CATCAGGGTG ATCCCCGACG ACGTGGTTTT TACCCCGGCG
CACATGGGTC CGTACGTGCT CTTGGAATTC GACAGGGCGG CACCCGTGGT CCACTTGGAA
CACCTGCGGT CGAGCGTGTT CTTGCGGGAT GCGGATGACG TTGAGGTGTA CAAGGAAGCG
CGGGCGGAGC TTGACCGGAT GGCGATGAGC CCAACCGACT CAATTAGGTT CATCGCGGAT
GTCATCGACA AGGTGGAGAC TACAGAATGA
|
|---|
| Protein sequence | MVSAIVWCMS ETTPAPRAYV LGGELRHARE NAGIGVRQLA GKLELSHSVI VRWEKGERLP
SPESVSAVAV ALGLSAAERD RLVQAAKDAA SEPVNSVSIG VAGMADALTT LMGFERAATS
ITDVSPLLVP GLLQTADYAR MVIGDSPDAE ARVAVRLGRR DVITRERNPV QYTAYILESV
LYQQVGESLL VDQLRMMRKL ADLPNVCIRV IPDDVVFTPA HMGPYVLLEF DRAAPVVHLE
HLRSSVFLRD ADDVEVYKEA RAELDRMAMS PTDSIRFIAD VIDKVETTE
|
|---|
| |