| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19560 |
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| Symbol | |
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| ID | 8387283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 2081917 |
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| End bp | 2083575 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644976020 |
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| Product | arabinose efflux permease family protein |
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| Protein accession | YP_003133802 |
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| Protein GI | 257055970 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.301888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.424094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTCAAAG TCTTCACGGG ACTGTTGGCC ACCCTGCTGG TGGCCACCCT GTCCTCCACG
ATCGTCACCA GCACCCTGCC CACGATCCTC GCCGAGTTGA ACGGCACACA AAGCCACTAC
ACGTGGGTGG TGACGGCGAT GCTGCTGACC TCCACCGTCA CCACACCGAT CTGGGGCAAG
CTCTCCGACC TGTTCAGCAA GAAGATGCTG TACCAGGTCG CGATCGCGAT CTTCACGGTG
GGCTGCGTCC TCGGCGGATT CTCCCAGACC ATGCCCCAAC TCATCGCGTT CCGTGCCGTG
CAGGGCATCG GCCTGGGAGG CCTCCAGTCA CTCGTCCAAG CCGTCATCGC CGCACTGGTC
GTGCCCCGCG AACGCGGCCG CTACGGCGGC TACATCGGCG CGATCTTCGC CATCTCCACC
GCCTCCGGAC CCCTGGTCGG CGGCCTGCTG GTCGACTCCC CCCTGGGCTG GCGCTGGACG
TTCTGGGTGT GCGTCCCCAT CACCGTCATC GCGTTCATCG TGCTGGGGCG GATACTGAAA
CTGCCCGTCG TCAAATACGA CGTCTCCATC GACTGGTTCG GCGCGACCTT CATCGTCGGC
GGAGTGGCGC TCCTGCTGGT CTGGATCACC CTGGCCGGAA AGAGCTTCGC CTGGTTGTCG
TGGCACACCG CCGCGCTCCT CGGCGGGAGC GCGGTCCTGA TCGCCCTCGC GGTGTACGTG
GAAAGCAAGG TACGCGAACC CGTCATCCCA CTACACCTGT TCCACAACCG CACCTTCACC
CTCGCCGTCG TGGCCTCACT CGCCGTCGGC ACCACCATGT TCGTCGGCAC CGTGTTCCTG
GTGCAGTACT TCCAGATCTC CCGCGGCTTC TCCCCCAGCA TCGCCGGGCT ACTGACCCTG
CCGATGGTGA TCGGCATGGT CTGCGCCTCC ACCATCACCG GACGCATCGT CTCACGCATC
GGCCGCACCA AACCGTTCCT GCTCGGCGGC TCACTGCCCC TGCTCGCCGG CCTGTTCCTG
CTGGCCAGCG TCGACCACGC CACCAACCTC GTGTGGATGA GCGTGTTCCT CACCCTGCTG
GGCATCGGCG TGGGCTCGGT CATGCAGAAC CTCGTGCTCG TCGCGCAGAA CACCGTGGGC
ATGCGCTATG TCGGTGTGGC CACCGCGGCC GTCACCTTCT TCCGCACCCT CGGCGGCGCC
ATCGGAGTGT CCGCACTCGG CGCCGTGCTG TCCGCCCAGG TCTCCGACAT CACCGCCGCC
TCCCTGGCCG CACGCGGCCT CCACGCGGAC GCCCACGTCA GCGCGGGAAG CCTCGACTTC
GACGCTCTTC CCGCCCCGGT CGCCGACATC GTCCGCGCCG CCTACGGCGA CGCGACCGGA
ACACTGTTCC TCATCAGTGC CGCCCTCGCG GTCATCACCG CCGTCAGCGT GCTGTTCATC
AAGGAAGCCC CGCTACGCGA CACCTTCGAC CTCGCCGACA AACCGACACC GACCCCGCCG
ACACCGGCCA ACTCCCACAC GCCCACGCGT GTGAGGAACC CGCGGTCCAC TCCACCCCGC
CGGTCCCCCC GCCCCAGCCG CCGGCCGAGA ACCCGCAGCC GACGGTTCCA GATCCGCCGC
ACGGCCGGCA CCCGCGCACC GGCCAGGCGC AACCTCTGA
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| Protein sequence | MLKVFTGLLA TLLVATLSST IVTSTLPTIL AELNGTQSHY TWVVTAMLLT STVTTPIWGK
LSDLFSKKML YQVAIAIFTV GCVLGGFSQT MPQLIAFRAV QGIGLGGLQS LVQAVIAALV
VPRERGRYGG YIGAIFAIST ASGPLVGGLL VDSPLGWRWT FWVCVPITVI AFIVLGRILK
LPVVKYDVSI DWFGATFIVG GVALLLVWIT LAGKSFAWLS WHTAALLGGS AVLIALAVYV
ESKVREPVIP LHLFHNRTFT LAVVASLAVG TTMFVGTVFL VQYFQISRGF SPSIAGLLTL
PMVIGMVCAS TITGRIVSRI GRTKPFLLGG SLPLLAGLFL LASVDHATNL VWMSVFLTLL
GIGVGSVMQN LVLVAQNTVG MRYVGVATAA VTFFRTLGGA IGVSALGAVL SAQVSDITAA
SLAARGLHAD AHVSAGSLDF DALPAPVADI VRAAYGDATG TLFLISAALA VITAVSVLFI
KEAPLRDTFD LADKPTPTPP TPANSHTPTR VRNPRSTPPR RSPRPSRRPR TRSRRFQIRR
TAGTRAPARR NL
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