Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_19360 |
Symbol | |
ID | 8387263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2060145 |
End bp | 2060804 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644976001 |
Product | predicted membrane protein |
Protein accession | YP_003133783 |
Protein GI | 257055951 |
COG category | [S] Function unknown |
COG ID | [COG3619] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0604968 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.138211 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGTCG CCGAGACGAA AAGTTCCGTG AGTCGTCGGT GGACCGTCGG TTTGCTGTTG TTGCTGACTT TCGTCACCGG ACTCGTGGAC GCCGTGAGTT TCCTGGAACT CGGGCAGGTG TTCGTCGCGA ACATGACCGG CAACATCACG TTCCTCGGTC TCAGCCTTCA CCCCGACGCG CATGTCGAAC CGACCACGCC TCTGGTGGCG TTGGGTGGGT TCGTCGTGGG AGCACTGATC GCCGGGCGGG TGGCGAACCG GTTCGACCGG GCCCCGCGGC GGTGGTTGCC CACGGCGTTC GGTATCGAGG CTTTCGTCAT CGCCCTGGTG GCGGTGCTGG CCGTGGCTTT GGGAATCCAG AACGGCACGG TGCATCACCT CGGTGTCCAT GACCTGACCA CCACTGTGCT CACACTTTCC CTCGCCGGTG TCGTGACCGA CAGTCAGATC GCCCGGGGTC CCATGGCGCG TCCGCATCGG CGGCTCGGGT CCATCGCCGC CATGTTGGCG GGAGCCGGTG TCGGGGCGCT GTTGTTGTTC GTGTCACTGA GCCTGGTGCT CGCCCTCGCG GCGAGCGGCA CCGCGGTCGT CGCCACCTGC TTCGCTCTGG TCGGCCGAGG CGCAGCTGAC ACGGACAACG ATCAAAAACG CAACCGGTGA
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Protein sequence | MTVAETKSSV SRRWTVGLLL LLTFVTGLVD AVSFLELGQV FVANMTGNIT FLGLSLHPDA HVEPTTPLVA LGGFVVGALI AGRVANRFDR APRRWLPTAF GIEAFVIALV AVLAVALGIQ NGTVHHLGVH DLTTTVLTLS LAGVVTDSQI ARGPMARPHR RLGSIAAMLA GAGVGALLLF VSLSLVLALA ASGTAVVATC FALVGRGAAD TDNDQKRNR
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