| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19280 |
|---|
| Symbol | |
|---|
| ID | 8387255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2052838 |
|---|
| End bp | 2053545 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644975993 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_003133775 |
|---|
| Protein GI | 257055943 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.28299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.286722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCGC CCCGCACCAC CCGACCACGG ACCGGACGCC CTCCGGTCAC CTCCCGCACC
CAGATCATGA CGGCCGCGCG CCGACTCATC GACCGCGACG GCTGGGAGAA ACTGACCCTC
CGCCGACTGG CCGCCGAGCT CGGGATCGGG ACCACGACCC TGTACCACCA CGTGCGGGAC
AAAGAAGACC TCATGGTCCT GCTGATCACC GACCACGCCG AACGAATACC GCGTCCCGAA
CTGCCGAACG ACCCCCGAGA ACGCATCGTC GTGGCCGCCA CCGCGCTCCA CGACGCCCTT
GCGGAACTTC CCTGGGCCGC GGAGGTGTTG ACGGTGGACG GGTTCCTCGG CCGCCTCGGC
GACACCGCCT TGTGGCATGT GGAGACGATC GTGGCGGGCG CCGTCGCCCA CGGCTGCACA
CTCGAACAAG CCGTCGACGT CTTCCGCAAC ATCTGGTACT ACACCGTCGG CGAGCTCCTC
GTCCGCGCAC GCACCGCCGA TCACCAGCAC ATCGATCGCG ACAAACTCCT CGACCGGCGG
GAACTGCGCT TCGGCGATCG CGACTCCACC CGACTACCGC ACCTGGCCGC CATCGGCACC
CGCTGGCCCA CCCTCGCCCG ACGCGACACC TACCCTCAAG GTCTTCGCGC CCTCGTCGAC
GGACTGCTCA CCCACGCCAC GACGGACACC GCCCCACCGT CCCGTTGA
|
|---|
| Protein sequence | MPSPRTTRPR TGRPPVTSRT QIMTAARRLI DRDGWEKLTL RRLAAELGIG TTTLYHHVRD
KEDLMVLLIT DHAERIPRPE LPNDPRERIV VAATALHDAL AELPWAAEVL TVDGFLGRLG
DTALWHVETI VAGAVAHGCT LEQAVDVFRN IWYYTVGELL VRARTADHQH IDRDKLLDRR
ELRFGDRDST RLPHLAAIGT RWPTLARRDT YPQGLRALVD GLLTHATTDT APPSR
|
|---|
| |