| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19240 |
|---|
| Symbol | |
|---|
| ID | 8387251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2047522 |
|---|
| End bp | 2048850 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644975989 |
|---|
| Product | dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein |
|---|
| Protein accession | YP_003133771 |
|---|
| Protein GI | 257055939 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.212117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.478414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGCAGC GCATCGCCGA GCTGGGGGTC GAACCAGCCG GTTTCTACTA CGAGAAGTTC
ACCCCCTCCG GCACGGCTGC CGCACGATCA GACGAGGCCG AGTCCGTATC CGCGGTGTCG
GAGCAGGTCG CGAGCACGGC GGAGGCGGCA GTCGATGCGA CCGGATCCGG CGATGTGGGG
GCGTTTGCCG TCGCTTCGGT GGTGGAGCTG GGAACCGAGG GCCGCAGCGT GGTGGGACAG
GACGTGTTCC CACCCGTGCC GGTGCGCCCG TCCAGGCAGG TGGTGGTCTA TTCGGCGCGG
GAGGAGACCG CGACCGCGCG CACCATCGTC GGACAAACCC TCTGGCCGGC ACGGGACGGT
GTCGGGGAGG GCGGTGCCAT GCCGGGCCCG GGCGGGACGC TTCTGCCCGC TTTGGATTCC
CGGGGTATCG CCGGACAGTC GATGTTCCCC GCGGCCGAGG ACCTCACCCC CCTGGTGGCC
TCCCCGTCGG TCCCCTCGAG GGGGGCTGAG CACCGCTTGC AGCGGGAACC CGCCGCCCCG
GCGTTGATCA CCCCGGGCCG GTTCGCGGGC AAGGTGGTGC TGGTGACCGG TGCGGCGCAG
GGGATCGGGG AACGGACGGC CCGGCGGATC AGTGCTGAGG GCGGCACCGT CGTGCTCGCC
GATCGAGCCG AGCTGGTGAC CGAACTCGCC GACGAACTGA CCGCGTCCGG ATGCGACGTT
GTCGCGGTCA CCGCCGATCT GGAGACCTGG GACGGCGCGC GGACGGTGGT GGACCAGGCG
GTGGCCCGCT ACGGGCGCGT CGACGTCGCC GTGCACACCG TCGGCGGGAC GATCTGGGCC
AAACCGTTCG AACACTACAG CCCGGAGGAG GTGCGGCGGG AGATCGACCG CTCGCTCTAC
CCCACGTTGT GGTGTTGCCG CGCCGTGCTG CCCACCATGA TCGAACAAGG GGGCGGGACG
ATCGTCAACG TCTCTTCGGT CGCCACCCGG GGGATCCATC GCGTGCCGTA CGCTGCCGCG
AAGGGCGGGG TCAACGCGAT CACCTCGGCG TTGGCGTGGG AAGCGGCGCC GCACGGCATC
CGGGTCGTGG CGACCGCGCC CGGCGGCACC GAGGCACCAC CGCGACGTAT CCCGCGCGGC
CCCGAGCCCC GGTCGGAGCA GGAAAAGGCG TGGTACCAGG CCGTCGTTGA CCAGACCACC
GCCTCGTCAC TGCTGAAACG CTACGGCACC TTGGACGAAC AAGCGGCTGC CATCGCGTTT
CTGGCCTCCG ACGAGGCGTC CTACATCACC GCCACGGTGT TGCCGGTGGC CGGGGGAGAT
CTGGGCTGA
|
|---|
| Protein sequence | MGQRIAELGV EPAGFYYEKF TPSGTAAARS DEAESVSAVS EQVASTAEAA VDATGSGDVG
AFAVASVVEL GTEGRSVVGQ DVFPPVPVRP SRQVVVYSAR EETATARTIV GQTLWPARDG
VGEGGAMPGP GGTLLPALDS RGIAGQSMFP AAEDLTPLVA SPSVPSRGAE HRLQREPAAP
ALITPGRFAG KVVLVTGAAQ GIGERTARRI SAEGGTVVLA DRAELVTELA DELTASGCDV
VAVTADLETW DGARTVVDQA VARYGRVDVA VHTVGGTIWA KPFEHYSPEE VRREIDRSLY
PTLWCCRAVL PTMIEQGGGT IVNVSSVATR GIHRVPYAAA KGGVNAITSA LAWEAAPHGI
RVVATAPGGT EAPPRRIPRG PEPRSEQEKA WYQAVVDQTT ASSLLKRYGT LDEQAAAIAF
LASDEASYIT ATVLPVAGGD LG
|
|---|
| |