| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19190 |
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| Symbol | |
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| ID | 8387246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 2040875 |
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| End bp | 2044177 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644975985 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_003133767 |
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| Protein GI | 257055935 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.525812 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.681395 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCTAG GGAAGTGGCT CCGCTCGTGG CCGGTGTACC GGCAACTGAC CGGAGACGAC
CCCTTGGGAA GGGGCGCCGC GGCAGAATCC ACGTTCTCGG CGGAGTTGAC CCCAAAAACC
GCGACCGCCG ACCGAGTGGT CAACTCCGTC TGCCCGTACT GCGCCGTCGG TTGCGCACAG
AAGGTCTACG TCAAAGACGA ACGCGTCGTC CAAATCGAAG GCGACCCCGG TAGCCCCATC
TCCCGAGGCC GACTGTGTCC CAAGGGTTCG GCCAGCAAAC AGCTGGTGAC AGGACCACAA
CGGGAGGAAC GGGTCCTCTA CCGCGCGCCC TACGCCACCG AATGGCAGGA ACTCGACCTC
GACACGGCCA TGGACATGGT GGCCGACAGG GTGCTCGACG CCCGGAACAA GGGCTGGCAG
GAGACCGACG AACACGGCCG CCGACTACGC CGCACCATGG GGATCGCGAG TCTGGGTGGT
GCGACCCTGG ACAACGAGGA GAACTACCTC ATCAAGAAGT TGTTCACCGC CCTGGGGGCC
GTGCAGATCG AGAACCAAGC CCGGATTTGA CACTCCGCCA CGGTTCCCGG TCTGGGAGCC
TCCTTCGGTC GCGGCGGCGC GACGGACTAC CAGCAAGACC TGATCAACTC AGACTGCATC
GTCATCATGG GCTCCAACAT GGCGGAAGCC CACCCCGTCG GCTTCCAATG GGTCATGGAA
GCCAAGGCCC GAGGCGCCGC CGTGATCCAC ATCGACCCCC GGTTCACACG GACCAGCGCC
TTGTCCGACA TGTACGTCCC CATCCGCGCC GGATCGGACA TCGCCTTCCT CGGCGGCGTG
ATCAACTACA TCCTGTCCAA CGAACTGGAC TTCCGGGAGT ACGTCACCGC GTACACCAAC
GCCTCCTTCC TCCTCAAGGA GGAGTATCAG GACACAGAAG ACCTCGACGG ACTGTTCAGC
GGATACGACC CGGAGACCGC CTCGTACAGC TCCGCCAGCT GGCAGTACGA AAGCGTCCGC
ACCGAGGACC TCGAGGACAC GAGCGCGAAG GCCAAACAAC AGACCACCGC GTATCAATAC
GGTTCCGGCG GCCCGAAGGT CGAAGGGGGA GCACGGCGAC TGGCGGCCGA TCCGACCCTG
CAACACCCGC GGTGCGTGTA TCAGACCCTC AAACGCCATT TCGCGCGCTA CACCCCCGAG
ATGGTCGAGA AGACCTGCGG TGTCCCCGCC GAGCAGTTCC TGAAGGTCTG CAAGGCGTGG
ACGTCGAACT CCGGCCGGGA ACGCACCGCG GCCCTGGTCT ACAGCGTGGG CTGGACCCAA
CACAGCGTCG GCGCGCAGTT CATCCGAGCA GGGTCGATCA TCCAATTGCT GCTCGGCAAC
ATCGGCAGGC CCGGCGGTGG GGTCATCGCG TTGCGCGGAC ACGCGAGCAT CCAGGGGTCG
ACCGACATCC CCACCCTGTT CAACCTGCTG CCCGGCTACC TGCCGATGCC GGACGCCGAA
AGCCACCCGA ACCTGAGAGC GTACGTGGAC AGCGTGGCCG GCGACCTGCA GAAGGGCTAT
TGGCGCAACG CCGACAGCTA CATGGTCTCG TTGCTGAAGG AGTACTGGGG CGACGCGGCG
ACCCCCGACA ACGACTTCTG CTTCGACTAC CTGCCCCGGA TCAACGGCGA CCACGGCACC
TACCGCTCGG TCATGGACAT GATCGACGGC AAGGTCTTCG GGTACTTCCT GCTCGGACAG
AACCCTGCCG TCGGCTCGGC ACACGGCCGA CTCCAACGCC TCGGCATGGC CAACCTGGAC
TGGCTGGTCG TCCGGGACCT GGCCATGATC GAAAGTGCGA CGTTCTGGAA GGACTCCCCG
GAGGTCGAGA CCGGGGAGAT CGATCCGACC CGGTGCCGCA CGGAGGTGTT CTTCTTCCCC
GCCGCCTCCC ACGTCGAGAA ATCGGGCACC TTCACCCAGA CCCAGCGCAT GCTGCAGTGG
CGTGACAAAG CCGTCGAACC ACGCGGCGAC CAACGGTCCG AACTGTGGTT CTTCTACCAC
CTCGGACGGC TGCTCAAGGA GAAACTCGCC GACTCCACCG ACGAACGGGA TCGCCCCCTG
CTGGATCTGG CATGGGACTA CGAGATGGAG GGGGACGAAC CGTCCGCCGA GGACGTGCTG
CGACACATCA ACGGCTACGA CCTGAACACG GGGCGGGTCG TCAACGGCTA CACCGACCTC
AAACCGGACG GCAGCACCTC GTGCGGCTGT TGGATCTACA GCGGGGTGTT CGCCGACGGG
GTCAACCAGG CGGCACGTCG GCTGTCCCGG CTGGACCAGC AGCAGTACGA GCTCGAATGG
GGTTGGACCT GGCCGATGAA CCGGCGGGTC CTGTACAACC GCGCGTCGGC CGACCCCCAA
GGCCGACCGT GGAGCGAACG CAAGGCACTG GTGTGGTGGG ACGCCGAACG CGGGGAATGG
ACCGGCTACG ACGAGCCGGA CTTCGAAAAG CACAAACCGC CGGACTATCG CCCACCCGAC
GGCGCGGTCG GACCCGAGGC ACTACGGGGC GACGACCCGT TCATCATGCA GGCGGACGGC
AAGGGCTGGC TGTTCGCGCC GAACGGATTG CAGGACGGTC CCCTGCCCAC GCACTACGAG
CCACACGAAT CCCCCGTACG CAACCTGCTG TACGGGCAGC AGGGCAACCC GACCCGCCAG
GTCTACGGCC GCTTGGACAA CCCGTCCAAC CCGGCTCCCC CGGAGTCGCA TTCGGAGGTG
TTCCCGTTCG TCTTCACCGC GGCGCGGTTG ACCGAACACC ACACCGCAGG CGGGATGAGT
CGCCAGTTGC CGTACCTGTC GGAACTCCAA CCGGAGCTGT TCGTGGAGGT CTCCCCCGAG
TTAGCGGCCG AACGGCGACT CCAACACATG GGCTGGGCAC ACGTGATCAC CAGTCGAACG
GCGATCGAGG CGCGCGTGGT CGTCACCGAC CGCATGGTCC CCCTGCGCAT CCACGACCGG
GTGATCCACC AGGTGTGGAT GCCTTATCAC TGGGGGCACC TCGGCCTGGT GAAAGGCGAC
ATGGTGAACG ACCTGATCGG CGTCGTACTC GATCCCAACG TGTTCATCCA GGAGAGCAAG
GTCACCACGT GCGACATCCG GCCCGGCCGC CGCCCACGAG GACGACGGTT GCTGGAGTAC
GTGGCCGACT ATCGTCGCCG CGCCGGGATC ACCATCGAGA CAGGCACCAG GCTCGCCACC
AACATCGACG TGGCCCACAC CGAACCGCGC GGCGACGTGT CCGGAACCTC GGAGGGACGA
TGA
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| Protein sequence | MGLGKWLRSW PVYRQLTGDD PLGRGAAAES TFSAELTPKT ATADRVVNSV CPYCAVGCAQ
KVYVKDERVV QIEGDPGSPI SRGRLCPKGS ASKQLVTGPQ REERVLYRAP YATEWQELDL
DTAMDMVADR VLDARNKGWQ ETDEHGRRLR RTMGIASLGG ATLDNEENYL IKKLFTALGA
VQIENQARIU HSATVPGLGA SFGRGGATDY QQDLINSDCI VIMGSNMAEA HPVGFQWVME
AKARGAAVIH IDPRFTRTSA LSDMYVPIRA GSDIAFLGGV INYILSNELD FREYVTAYTN
ASFLLKEEYQ DTEDLDGLFS GYDPETASYS SASWQYESVR TEDLEDTSAK AKQQTTAYQY
GSGGPKVEGG ARRLAADPTL QHPRCVYQTL KRHFARYTPE MVEKTCGVPA EQFLKVCKAW
TSNSGRERTA ALVYSVGWTQ HSVGAQFIRA GSIIQLLLGN IGRPGGGVIA LRGHASIQGS
TDIPTLFNLL PGYLPMPDAE SHPNLRAYVD SVAGDLQKGY WRNADSYMVS LLKEYWGDAA
TPDNDFCFDY LPRINGDHGT YRSVMDMIDG KVFGYFLLGQ NPAVGSAHGR LQRLGMANLD
WLVVRDLAMI ESATFWKDSP EVETGEIDPT RCRTEVFFFP AASHVEKSGT FTQTQRMLQW
RDKAVEPRGD QRSELWFFYH LGRLLKEKLA DSTDERDRPL LDLAWDYEME GDEPSAEDVL
RHINGYDLNT GRVVNGYTDL KPDGSTSCGC WIYSGVFADG VNQAARRLSR LDQQQYELEW
GWTWPMNRRV LYNRASADPQ GRPWSERKAL VWWDAERGEW TGYDEPDFEK HKPPDYRPPD
GAVGPEALRG DDPFIMQADG KGWLFAPNGL QDGPLPTHYE PHESPVRNLL YGQQGNPTRQ
VYGRLDNPSN PAPPESHSEV FPFVFTAARL TEHHTAGGMS RQLPYLSELQ PELFVEVSPE
LAAERRLQHM GWAHVITSRT AIEARVVVTD RMVPLRIHDR VIHQVWMPYH WGHLGLVKGD
MVNDLIGVVL DPNVFIQESK VTTCDIRPGR RPRGRRLLEY VADYRRRAGI TIETGTRLAT
NIDVAHTEPR GDVSGTSEGR
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