| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19080 |
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| Symbol | |
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| ID | 8387235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2027842 |
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| End bp | 2029173 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644975975 |
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| Product | arabinose efflux permease family protein |
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| Protein accession | YP_003133757 |
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| Protein GI | 257055925 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.297545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.79631 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACA CGGTTCACCG GAATTCCCGG GTTCAGCTAC GCCGAGCCGT CCTGTCCAGC
TATCTCGGCA GTGTGATCGA GTACTACGAC TTCCTCCTCT ACTCGACGGT CTCCGCTCTG
GTGTTCAACC GCGTGTTCTT CTCCGAGCTC GATCCCGTGG TCGGCACGGT GGCTAGCCTC
GGAACCTTCG CCACGGGGTA TCTCGCCAGA CCGTTGGGCG GAGTCGTGTT CGGTCACTTC
GGTGACCGGC TCGGTCGCAA ACGGATGCTG GTGATCACGA TGACGATGAT GGGCGTCGTC
AGCACGCTCA TCGGACTGCT GCCCACGTAC GCGCAGATCG GCGTTTGGGC GCCCATCCTG
CTGGTCGTGC TGCGCGTGCT CCAGGGCATC GCCATCGGCG GTGAGTGGGG CGGAGCGGTG
CTGATGTCGG CCGAGCACGC CACCTCACGG CGTGGTTTGT GGGCGAGTTT CACGAACGCG
GGTGCTCCCA GCGGCATGGT CCTGTCCACA GTGGTACTGG CACTGGTCTC CGGCGCGGTG
AGCGAGCAAC AGTTCATCGA CTGGGGCTGG CGCATCCCCT TCCTGCTCAG CGCCCTGTTG
CTGATCCTGG GGCTGTTCGT GCGGGCGAAG GTGGACGAGA CACCGGTCTT CGCCAGCGCC
CGACCGAAGC GGTCGGAGTC GCTGCCGTTG CTGGAGGTCC TCCGGCACCA TCCCCGCAAT
CTGCTGCTGG CCATCGGCAT CGGTTTCGGT GCCTTCGTGG TCCAGGCGAC GCTGACCACG
TTCCTGCTGT CCTACGCGGT GGAGGCGGGG TTCACCCGAC AGACGGTGCT CAACGTGCTC
GCGGTGTCCT CGGTGGGCGC GGTGCTCGGC ATCGTGGGCT TTTCGGCACT GTCGGACCGA
ATCGGCCGCA GGCCGGTCGT GATCGCCGGT GCCATCGGGA TGGCGGTGGT GTCCTTCATC
CTGTTCCCCC TGATCGACAC CGGCTCGGTC GTGTCGCTGA CGGTGGCCGT CGTCCTCGGC
CAGTCAGTGG TCCACCCGGC CATGTACGGG CCGTTGGCGG CGCTGTACAC GGAGATGTTC
GGCACCCGGA CGCGGTACAC GGGGGCCTCC CTCGGTTACC AGGTCTCCGC CACGGGAGCC
GGTTTGGCGC CGGTGGTGTT CGCGAGTATG AGCGGCGGGG GAGTCTCCTC GTTGGCGATC
TCCGCCCTCA TCGCCGCGAG TTGCGTGATC ACCGCTGTGT CCATCATGGC CACCAAGGAG
AGCCATCGCG CCGAGCTGGG GGAACGACCC GATGCCACGG ACGCGCCGGG AGAGCCCGCG
GTGCAGAGCT GA
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| Protein sequence | MSDTVHRNSR VQLRRAVLSS YLGSVIEYYD FLLYSTVSAL VFNRVFFSEL DPVVGTVASL
GTFATGYLAR PLGGVVFGHF GDRLGRKRML VITMTMMGVV STLIGLLPTY AQIGVWAPIL
LVVLRVLQGI AIGGEWGGAV LMSAEHATSR RGLWASFTNA GAPSGMVLST VVLALVSGAV
SEQQFIDWGW RIPFLLSALL LILGLFVRAK VDETPVFASA RPKRSESLPL LEVLRHHPRN
LLLAIGIGFG AFVVQATLTT FLLSYAVEAG FTRQTVLNVL AVSSVGAVLG IVGFSALSDR
IGRRPVVIAG AIGMAVVSFI LFPLIDTGSV VSLTVAVVLG QSVVHPAMYG PLAALYTEMF
GTRTRYTGAS LGYQVSATGA GLAPVVFASM SGGGVSSLAI SALIAASCVI TAVSIMATKE
SHRAELGERP DATDAPGEPA VQS
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