| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19070 |
|---|
| Symbol | |
|---|
| ID | 8387234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2026839 |
|---|
| End bp | 2027717 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644975974 |
|---|
| Product | phenylacetic acid-responsive transcriptional repressor |
|---|
| Protein accession | YP_003133756 |
|---|
| Protein GI | 257055924 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0202563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAGG ACCTCTTCGT AGTCGAGCCC GGTGAGGTCG ACGGAACGGC CGACATACCG
CGCCCACAGA CACTCCTGTT GACCTTCTTC GGCGGCTATG TCCTTCGCCG CGGGGTCCAG
GTGGCCACGG CGAGCGTGCT CGACGTCCTC CGTCGCCTAG GGGTCTCCGA GCATGCGACC
CGCTCGACGC TCAGCCGGAT GGCGCGACGC GGTCTGCTGT ATCGCACCCG ACGTGGACGT
AACGTGTACC TGGGCCTCAC GCCGCGGCTG CGCGAGATCC TGCACGACGG CGAGTACCGC
ATCTGGCACA TGGGAGCGGT GAACACACAG TGGGACGGCA CGTGGACGCT GTTGGGCTTC
TCCCTACCGG AGTCCTGGCA GCGGCAACGA CACGTCCTCC GCTCCCGGTT GCTGTGGGCC
GGATTCGGCA GTCTGCAGGG CGGATTGTGG ATAGCACCGT CTCCTGTAGA CACCGATGCG
GTACTCAATG GACTCGAAGC CGCGGAACAC GTGAAGGTGT TCCAGGCTCG TGCGCTACCC
CCGACCGACG TGTCCGAACT CGTCCGCAAC ACGTGGGACC TCGCCGCCGT GGCGGCACAT
TACCGGCGTT TCCTCCATCG CTGGAGCGGT CCCACACTGC CCGCCGCCCA GACGGACAGC
CTCGGCCGAC AACTGCTGTT GGAAACCGAG TGGTTGCAGA CCATCCGCCA GGACCCCAGA
CTGCCGAAGG AACACCTCCC CCACGATTGG CCCGCGGTAC GCGCACAACA GCTGTTCCAC
TTGCTGCACG CCGAACTCGA TCCCGCCGCC AGGGCGACCG CGGCCGAGGT GCTCGACACC
ATCCCGGACG AGGTCGGCGC CAGCGATCCC GACACGTAG
|
|---|
| Protein sequence | MTEDLFVVEP GEVDGTADIP RPQTLLLTFF GGYVLRRGVQ VATASVLDVL RRLGVSEHAT
RSTLSRMARR GLLYRTRRGR NVYLGLTPRL REILHDGEYR IWHMGAVNTQ WDGTWTLLGF
SLPESWQRQR HVLRSRLLWA GFGSLQGGLW IAPSPVDTDA VLNGLEAAEH VKVFQARALP
PTDVSELVRN TWDLAAVAAH YRRFLHRWSG PTLPAAQTDS LGRQLLLETE WLQTIRQDPR
LPKEHLPHDW PAVRAQQLFH LLHAELDPAA RATAAEVLDT IPDEVGASDP DT
|
|---|
| |