Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_18930 |
Symbol | |
ID | 8387220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2012662 |
End bp | 2013375 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644975960 |
Product | 3-oxoacid CoA-transferase, A subunit |
Protein accession | YP_003133742 |
Protein GI | 257055910 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.0745996 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.773659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTCA CCTTCCCCTC TGCCGTCGAG GCGTTGCAGG ATCTCCTCTT CGACGGGATG ACCCTCGCCG TCGGAGGTTT CGGGCTCAGC GGTATCCCCA CCGATCTGAT CGATGCGGTC CGTGTCTCCG GTGTCCGCGA TCTCACCGTC ATCTCCAACA ACATGGGTGT CGACGGGATC GGACTGGGCG TCCTCATCGA GAAAGGCCAG GTCCGCAAGG TCATCGCCTC CTATGTCGGC GAGAACAAGC TCTTCGCCGA GCAGTACCTC GCCGGCGAGT TGGAGGTGGA GTTCAACCCG CAGGGCACCC TCGCCGAGCG GCTCCGTGCC GGTGGCGCCG GTATCCCGGC CTTCTACACC CGCACCGGTG TGGGGACGGA GGTCGCCGAG GGGAAGCCGA TGAAGGTCTT CGACGGTGTC GAGTACGTCA TGGAACGCGG TCTCGTCGCC GACGTCTCCT TGGTCCGGGC CCACCGTGCC GACGAGGCCG GCAACCTCAC CTACCGCTAC ACCGCCCGCA ACTTCAATCC GGTCGTCGCG ACCGCGGGCC GTATCACCGT CGCGGAGGTC GAGGAGATCG TCCCCGATGG CGAGATCCAC CCCGACCATG TCGTCACCCC GAGCATCTAC ATCCAGCGGC TGGTGGTGAC CACCAGCGAG CACAAGCACA TCGAACAGCG CACCACGCGT CCCCGTGTCG CGGACCCCGT CTGA
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Protein sequence | MAVTFPSAVE ALQDLLFDGM TLAVGGFGLS GIPTDLIDAV RVSGVRDLTV ISNNMGVDGI GLGVLIEKGQ VRKVIASYVG ENKLFAEQYL AGELEVEFNP QGTLAERLRA GGAGIPAFYT RTGVGTEVAE GKPMKVFDGV EYVMERGLVA DVSLVRAHRA DEAGNLTYRY TARNFNPVVA TAGRITVAEV EEIVPDGEIH PDHVVTPSIY IQRLVVTTSE HKHIEQRTTR PRVADPV
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