| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_18240 |
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| Symbol | |
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| ID | 8387151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 1890369 |
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| End bp | 1891655 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644975892 |
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| Product | RNA polymerase, sigma subunit, ECF family |
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| Protein accession | YP_003133674 |
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| Protein GI | 257055842 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.542706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCTCCGGCCG TGACACCGTC GCCGCCGTCT GGCGGATCGA GTCCGCGCGT
ATCGTCGGCG CACTCGCGCG ATACACCGGC GATTTCGCGT TGGCCGAGGA TCTCGCCCAG
GAGGCGTTGG CCGAGGCGCT GGTGACCTGG CCACGCGAGG GGGTTCCCCG CAACGCCGCG
GGCTGGTTGC TCACCGTCGG TCGACGCCGC GCGATCGACG CGTTCCGCCG GAACACCGCT
CTTGAAAAGA GGTACGCCGC CCTCGCCCAC GACCTACGCG AGGGCGGCAT CTCCTCGGGG
AGCGCGCCCA CCAATCCACC CGACGGCGCC GAGGACGTGC TGTGGGATCC GGACCGGATC
GACGACGACG TGCTCGCGTT GATGTTCATC GCCTGCCATC CGGTGCTGTC GAAAGAGGCG
CGGATAGCGC TCACCCTGCG CGTGGTCGGG GGCCTCACCA GCGACGAGAT CGCCAAGGCC
TTCCTGGCGC CGACCGCCAC CGTGCAGGCG CGGATCACCC GGGCGAAGAA GACGCTCAAG
GCGGCCCGGG TGCCGTTCGG GGTGCCGCCA CCCGAGGAGC GGGTTCGGCG ACTCGGCTCG
GTCCTCAACG TGATCTATCT GATCTTCACC GAGGGGTCGA CGGCGAGCTC CGGTGACGAC
CTGATCCGGT TCGACCTCGC CGGCGAAGCC CAACGGCTCG CACGAGTGTT GGCTCGGCTG
ATGCCGGACG AACCGGAGGT CCACGGTCTG CTGGCGCTGC TCGAGCTGAC CGCCGCGCGG
TTTCCCGCCC GCACCGGGCC GGACGGGGAG CCGGTGCTGT TGGAGCAGCA GGACCGCCGC
CGCTGGGACC AGGCCGCGAT CCGACGAGGT CGGGCGGCTC TGAGCCGTGC TGCTCGGATC
GGCCGTGGCC TGGGCGCGTA CGGCCTGCAG GCGGCGATCG CGGAGTGCCA CGCCATCGCC
CCGTCGGTCG ACGCGACGAA CTGGGACCGC ATCGTGCTCC TCTACGAGGC CCTCAACCGC
CTCGCGCCGT CACCGGTGGT GGAACTCAAC CGCGCGGTGG CGGTCTCCAT GGCTCAGGGG
CCGAAGGCGG CGTTACGGAT CGTGGACGAT CTGGTCGCCG CCGGCGCCCT ACCGAACTCG
CATCTGCTCC CCAGCGTTCG TGGGGAGCTG TTGATCCGGT TGGGGCGCGC TTCCGAGGCG
CGCACCGAAT TGCGGCGCGC CATCGAGCTG TGCGGTAACG CGCGTGAGCG GGCACTGTTG
CGGCGCAAAC TCGCCAATCT CGACTAG
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| Protein sequence | MTDTSGRDTV AAVWRIESAR IVGALARYTG DFALAEDLAQ EALAEALVTW PREGVPRNAA
GWLLTVGRRR AIDAFRRNTA LEKRYAALAH DLREGGISSG SAPTNPPDGA EDVLWDPDRI
DDDVLALMFI ACHPVLSKEA RIALTLRVVG GLTSDEIAKA FLAPTATVQA RITRAKKTLK
AARVPFGVPP PEERVRRLGS VLNVIYLIFT EGSTASSGDD LIRFDLAGEA QRLARVLARL
MPDEPEVHGL LALLELTAAR FPARTGPDGE PVLLEQQDRR RWDQAAIRRG RAALSRAARI
GRGLGAYGLQ AAIAECHAIA PSVDATNWDR IVLLYEALNR LAPSPVVELN RAVAVSMAQG
PKAALRIVDD LVAAGALPNS HLLPSVRGEL LIRLGRASEA RTELRRAIEL CGNARERALL
RRKLANLD
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