| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_18120 |
|---|
| Symbol | |
|---|
| ID | 8387139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 1880129 |
|---|
| End bp | 1881028 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644975880 |
|---|
| Product | RNA polymerase, sigma subunit, ECF family |
|---|
| Protein accession | YP_003133662 |
|---|
| Protein GI | 257055830 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGAC GCGTGGTCCG ACCGGAAGCG CTGCGACAGT TCCAGGCGCA GCGCCCGCGC
TTGTTCGCGG TGGCCTACCG GCTTCTGGGT TCGGCCGGCG AAGCCGAGGA CGTCATCCAG
GACGCCTTCC TTCGTTTCCA TGAAGCGGAC CACGCCACGA TCGACAACCC CGCGGCCTGG
CTGACCAAGG TGGTCACCAA TCTCTGCCTC AACCGACTGA CGTCCGCGCG GGCCCGCCGG
GAGGACTACG TGGGGCCGTG GCTACCCGAA CCCGTGGCGA CCGCCGACCC CGCGTTGGGA
CCGTTGGACA CCGTCGAGCA GCGCGAGTCC GTGTCGATGG CCTTCCTTCT GCTCCTGGAG
CGATTGACAC CCCCGGAACG TGCCGTGTTC GTGCTGCGTT CCGCCTTCGG CTACCGACAC
CGAGAGATCG CGCAGATCCT CGGCCTGAGT GAGGCGAACT GCCAACAGCT CTACCACCGC
GCGAAACGGC GCATCGGTGA CGAGCGCCCA CGCTTCTCGG CGTCCCGCGC CGACGGTGAA
CGCATCACCC GGCGCTTCCT CGTCGCAGCC CGAAACGGTG ACCTCACCGC GTTACAGGAA
CTGCTCGCGG ACGACGTCGT CGCATGGGCC GACGGCGGCG GCAACACCAC AGCGGCGCGG
CGTCCGGTGC GTGGTGCCGA ACGCGTGGCC CGGTATTTGG GATGGATGAG CCGTCCCGTG
TCGGGACTGA GTGTTCGGGT CATGGAGATC AACGGTCGGC CCGGGATGGT GGCGATCGCG
GAGGGACACC CCCTGCTGGC CGTGGTGCTG GAGGTCCACG CGGGCAGGAT CTCCGACATC
CGGATCGTCG CCAACCCCGA CAAACTCACC TTCCTCGCGG CCCAATTGCC GAACCTGTGA
|
|---|
| Protein sequence | MLGRVVRPEA LRQFQAQRPR LFAVAYRLLG SAGEAEDVIQ DAFLRFHEAD HATIDNPAAW
LTKVVTNLCL NRLTSARARR EDYVGPWLPE PVATADPALG PLDTVEQRES VSMAFLLLLE
RLTPPERAVF VLRSAFGYRH REIAQILGLS EANCQQLYHR AKRRIGDERP RFSASRADGE
RITRRFLVAA RNGDLTALQE LLADDVVAWA DGGGNTTAAR RPVRGAERVA RYLGWMSRPV
SGLSVRVMEI NGRPGMVAIA EGHPLLAVVL EVHAGRISDI RIVANPDKLT FLAAQLPNL
|
|---|
| |