Gene Svir_18120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_18120 
Symbol 
ID8387139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1880129 
End bp1881028 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content68% 
IMG OID644975880 
ProductRNA polymerase, sigma subunit, ECF family 
Protein accessionYP_003133662 
Protein GI257055830 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGGAC GCGTGGTCCG ACCGGAAGCG CTGCGACAGT TCCAGGCGCA GCGCCCGCGC 
TTGTTCGCGG TGGCCTACCG GCTTCTGGGT TCGGCCGGCG AAGCCGAGGA CGTCATCCAG
GACGCCTTCC TTCGTTTCCA TGAAGCGGAC CACGCCACGA TCGACAACCC CGCGGCCTGG
CTGACCAAGG TGGTCACCAA TCTCTGCCTC AACCGACTGA CGTCCGCGCG GGCCCGCCGG
GAGGACTACG TGGGGCCGTG GCTACCCGAA CCCGTGGCGA CCGCCGACCC CGCGTTGGGA
CCGTTGGACA CCGTCGAGCA GCGCGAGTCC GTGTCGATGG CCTTCCTTCT GCTCCTGGAG
CGATTGACAC CCCCGGAACG TGCCGTGTTC GTGCTGCGTT CCGCCTTCGG CTACCGACAC
CGAGAGATCG CGCAGATCCT CGGCCTGAGT GAGGCGAACT GCCAACAGCT CTACCACCGC
GCGAAACGGC GCATCGGTGA CGAGCGCCCA CGCTTCTCGG CGTCCCGCGC CGACGGTGAA
CGCATCACCC GGCGCTTCCT CGTCGCAGCC CGAAACGGTG ACCTCACCGC GTTACAGGAA
CTGCTCGCGG ACGACGTCGT CGCATGGGCC GACGGCGGCG GCAACACCAC AGCGGCGCGG
CGTCCGGTGC GTGGTGCCGA ACGCGTGGCC CGGTATTTGG GATGGATGAG CCGTCCCGTG
TCGGGACTGA GTGTTCGGGT CATGGAGATC AACGGTCGGC CCGGGATGGT GGCGATCGCG
GAGGGACACC CCCTGCTGGC CGTGGTGCTG GAGGTCCACG CGGGCAGGAT CTCCGACATC
CGGATCGTCG CCAACCCCGA CAAACTCACC TTCCTCGCGG CCCAATTGCC GAACCTGTGA
 
Protein sequence
MLGRVVRPEA LRQFQAQRPR LFAVAYRLLG SAGEAEDVIQ DAFLRFHEAD HATIDNPAAW 
LTKVVTNLCL NRLTSARARR EDYVGPWLPE PVATADPALG PLDTVEQRES VSMAFLLLLE
RLTPPERAVF VLRSAFGYRH REIAQILGLS EANCQQLYHR AKRRIGDERP RFSASRADGE
RITRRFLVAA RNGDLTALQE LLADDVVAWA DGGGNTTAAR RPVRGAERVA RYLGWMSRPV
SGLSVRVMEI NGRPGMVAIA EGHPLLAVVL EVHAGRISDI RIVANPDKLT FLAAQLPNL