| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_17790 |
|---|
| Symbol | |
|---|
| ID | 8387106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 1846499 |
|---|
| End bp | 1847365 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644975849 |
|---|
| Product | dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein |
|---|
| Protein accession | YP_003133631 |
|---|
| Protein GI | 257055799 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.40467 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTCT ACCTGAGGCG AGTTCAGTTC TTCAACCAAG GAGTTCACTA TGGACACGAT
GTCCGGTTCA GCACGTCCGC AAGGAGTGGC CAAGAGCGCC TGTCCGGACG CGTCATCCTG
GTCACGGGCG CGGCGGGAGG GCTCGGCACT TCGATCGTGT CCCGATTGGC GGCCGAAGGA
GCTCGGGTAG TAGCCTCCGA CATCGACGCA AACACGTGTG CGTCTGTCAT CGCCGAGCTC
GCAGATAGAG GTGGAGCTCA TACATCACTC CCGTTGGACG TTCGCAGCGA CGAGGATTGG
CAAGCCGCGA TCGAACACAT CCAAAACCGA TACGGCGTGC TACACGGCTG CGTCAACAAC
GCCGCAATCG GCGGCCTCGC ATCAGTTGCG GACGAACGAC GCGATCGCTG GGATCGCATC
ATCGCCATCG GCCAGACCGG CGTATGGCTC GGTATGAAAT ACGCCGGCGG CCTACTCGAA
CGTTGCGGGG GTGGCTCGAT CGTCAACATC TGCTCAATCC TCGGCACCGT CGGCGGCTTC
GGCGACAGCA TCGCCTACCA TGCCGCCAAA GGGGCCGTAC GAGCGATGAC CAAGAACGCG
GCCCTGCATT GGGCCACACA AGGCATTCGC GTGAACTCGC TCCACCCCGG TTTCATCGGC
ACGGAGCAGG TGCTGGACCT CTACGCGGGT TCACCGCGCC ACGAGGCCAT GCTCTCTCAC
ACTCCGATGG GACGACTCGC TGATCCAGCC GAGATCGCCG CCGTCGTCGC CTTCTTGCTG
AGCGACGATT CGTCGTATAT GACGGGTTCG GAAATCTACG CGGACGGAGG CTGGACCGCA
CGCTACTCGC GACACCAGTC CAACTGA
|
|---|
| Protein sequence | MPLYLRRVQF FNQGVHYGHD VRFSTSARSG QERLSGRVIL VTGAAGGLGT SIVSRLAAEG
ARVVASDIDA NTCASVIAEL ADRGGAHTSL PLDVRSDEDW QAAIEHIQNR YGVLHGCVNN
AAIGGLASVA DERRDRWDRI IAIGQTGVWL GMKYAGGLLE RCGGGSIVNI CSILGTVGGF
GDSIAYHAAK GAVRAMTKNA ALHWATQGIR VNSLHPGFIG TEQVLDLYAG SPRHEAMLSH
TPMGRLADPA EIAAVVAFLL SDDSSYMTGS EIYADGGWTA RYSRHQSN
|
|---|
| |