| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_17670 |
|---|
| Symbol | |
|---|
| ID | 8387094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1831240 |
|---|
| End bp | 1832772 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644975838 |
|---|
| Product | precorrin-2 C20-methyltransferase |
|---|
| Protein accession | YP_003133620 |
|---|
| Protein GI | 257055788 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1010] Precorrin-3B methylase |
|---|
| TIGRFAM ID | [TIGR01466] precorrin-3B C17-methyltransferase
[TIGR01467] precorrin-2 C20-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0155473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCA CGCTCTACGG TGTGGGAGTC GGCCCCGGCG ACCCCGAACT GATCACGCTG
AAGGCGGCCC GACTCATCGG CGCGGCCGAC GTCGTCGCCT ATCACGCGGG GGTCGGCAAA
CAGTCGAACG CGCGGCGCAT CGCCGCCGAT CTGCTCCCAC CGGGGGTCGT CGAGGAGGAG
CTGGTCTACC CGGTCACGAC ACAGACCACC GATCACCCCG GGGGTTACGC CGGGGCGATG
GCCGACTTCT ACGCCGAATG TGCCGCGCGT CTGCGCGCGC ATTTGGCGGC GGGCCGTGAC
GTCGTCGTCC TCACCGAGGG CGATCCGATG TTCTACGGCT CGTTCATGTA CCTGCACGAT
CGGCTGGCCG CGGAGTTCCC CACCGAGGTG GTGGCCGGGG TACCCGCGTT CGCGGCGGCC
ACCGCCTCCG CCTCGTTGCC GCTCGTGCGC CAGACGGACG TGTTGACCGT CCTGCCCGGC
ACCCTGCCCG AACCCGAACT CGCCCGCAGG CTCGCCGACA CCGACGGTGC GGTGATCATG
AAGCTCGGTC GCACGTTCGG CAAGGTCCGC TCCGCGCTGG AACAGGCCGG ACGTCTGGAG
GGCGCCTGGT ACGTGGAACG GGCCTCGATG GACGTCGAAC GGGTGCTGCC CGTCGCCGAC
GTCGACCCGG AGGAGGTGCC GTACTTCTCG GTGATCCTGG TGCCCGGCGA TACCAGGCCG
GGCGTGGCCC GCTACGACCG GACGACCACG ACCACCGTGC CGACCACGGC CGCTGAGGCG
AGCGAGGTGG CCGCCGACCC GTCGGCGGAG GTCGTCGTCG TGGGACTCGG TCCGGGCCCG
GACGAATGGC TGTCCCCCGA GGCGTCGCAG GTGCTCGCCG AGGTGGACCA CGTCGTCGGC
TACGGGCCGT ACGTCGCCCG GGTCCCCCAA CGTGCGGGGC TCGTGCGGCA CGCCTCGGGC
AACACCGTCG AGGTGGATCG GGCGCGGAAG GCTCTCGAAC TGGCGTTGGC GGGGGAGCGG
GTCGCGGTCG TCTCCGGCGG CGACGCCGGC ATCTTCGGCA TGGCCTCGGC CGTGTTCGAG
GCCGCCGAGG ACCCGCGCTA CGCCGATGTG GCGGTACGAG TGGTGCCCGG GATCTCGGCG
GTGCAGGCCG TGGCCGCCCG TGCCGGTGCG CCGATCGGCG CCGACTTCGC GGTGCTGAGC
TTGTCCGACC GGCTCAAACC GTGGACGGTC GTGGAGCAAC GACTGCGCGC CGCCGCGCAG
GCCGACCTCG TGCTCGCCCT CTACAACCCA CGTTCGCGCT CGCGCAGCGA ACAACTCGCC
AAGGCGCAGG CGGTGCTGCT GGAACACCGC GGCCCGGACA CGGTCGTCGT GGTCGGACGC
GACGTCGGCA GGGAACAGGA AAGCCTCACG GTGACCACGC TGGGCGCGCT CGATCCCGAG
ACGATCGACA TGAAATGCCT GCTCATCGTC GGCGCGTCGG CGACCCGGGT GACCCGGTCA
GGACGGGTCT GGAGTCCCCG TTTCGTCAAG TGA
|
|---|
| Protein sequence | MIGTLYGVGV GPGDPELITL KAARLIGAAD VVAYHAGVGK QSNARRIAAD LLPPGVVEEE
LVYPVTTQTT DHPGGYAGAM ADFYAECAAR LRAHLAAGRD VVVLTEGDPM FYGSFMYLHD
RLAAEFPTEV VAGVPAFAAA TASASLPLVR QTDVLTVLPG TLPEPELARR LADTDGAVIM
KLGRTFGKVR SALEQAGRLE GAWYVERASM DVERVLPVAD VDPEEVPYFS VILVPGDTRP
GVARYDRTTT TTVPTTAAEA SEVAADPSAE VVVVGLGPGP DEWLSPEASQ VLAEVDHVVG
YGPYVARVPQ RAGLVRHASG NTVEVDRARK ALELALAGER VAVVSGGDAG IFGMASAVFE
AAEDPRYADV AVRVVPGISA VQAVAARAGA PIGADFAVLS LSDRLKPWTV VEQRLRAAAQ
ADLVLALYNP RSRSRSEQLA KAQAVLLEHR GPDTVVVVGR DVGREQESLT VTTLGALDPE
TIDMKCLLIV GASATRVTRS GRVWSPRFVK
|
|---|
| |