Gene Svir_17350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_17350 
Symbol 
ID8387064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1791322 
End bp1793025 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content66% 
IMG OID644975808 
ProductCRISPR-associated protein, Cse1 family 
Protein accessionYP_003133590 
Protein GI257055758 
COG category 
COG ID 
TIGRFAM ID[TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCTGCG TGACAGATGA GTACAACTTG CTGACGCAGC CATGGTTGCC GATACGGCAT 
CGGCACAGTG GCGCGCTCGA AGCGGTGGGG ATCGCTGAGG CACTACTGCG TTCCCATGAA
CTCGCCGATC TGGTCGTTGA TGTGCCGACC CAGGTTCCGG CGCTGCTGCG ACAAGTTCTC
CTACCCGTCA TGGTCGATGC CCTCGGACCA CCGACCACGC GAGAGGGATG GTCGAAACGG
TTTGCGGCCG GGCGCTTCAC CGACGAAGAG CGTGACCGAC TGTCTGAGTA TTTCGACCAG
TATCGCGATC GATTCGCGCT CTTCCACGAC ACGCGGCCCT TCGCACAGGT TGCGGGATTG
CGAACCCCCA AGGGGGAGAC GAAAGGGACC GCGGTTCTGG TGGCCACGGC GGCGTCCGGG
AACAACGTCC CGTTGTTCAC ATCCCGCACC GACGGTGATC CGTTCCCGCT GACGCCGGGG
GAGGCTGCGC GGTGGCTGCT GCACACACAG TGTTGGGATA CCGCCGCCAT CAAAAGCGGC
GCTGAAGGCG ACCCGAAAGT CAAGGCGGGC AAGACGACCG GGAACCCGAC CGGACCACTG
GGACAGCTCG GTGTCGTCGT TCCCGTTGGA CGCAGTCTGT ATGAGACGTT GCTGTTGAAC
ACCCCGGTCC ACCCCGAGGA CATGTGGGGG GTTCCACAGT GGAAACGCGA TCCTCCTTTC
GGACCTGAAT GGGATACCTA TGCCCCGCAG GGCTTGTTGG AGCTGTGGAC GTGGCAGTCA
CGGCGGGTGC GCCTTTCACC GGAGCAAACC GGTGACGGGC AGCGGGTCTG CCGTGTGGTG
CTGACCGCGG GCGATCGCAT CAGCGTGCTA CCGGAGTGGG AACCGCACAC GACGTGGACG
TCCGCCCCGA ATCCCAAGGC AGGTGCCCCC GCGCGACGAC CGCGTCGACA TGCCCCGGGC
AAGGCCATCT GGCAAGGCAT GGAGGCACTG CTCGCCGTGG AACGCGAGGA GAAAGGGAAA
TTCCACACCA GCGATCTGCT CCGCCAGATC AACAGCGCCC GTGTCGACGG TGTGATCGCC
GACGACTACC CCCTGCGGGT ACAGACTTAC GGGCTGCTGT ACGGCAACCA GTCCGCTGTG
GTGGAAGACA TCCTGCACGA TGCGATGCCT CTACCCGTGG CCGCGTTACG CGCCGAGGGT
GAAGTCTATG ACCTGGTGGC CGAAGCGACC GAACAAGCTG AGGAACTCGC GCAGGCTGTC
AACAGCCTGT CGGCGGACCT ACGGCGCGCG CAGGGGGCGG ACCCCATCCC GTGGGACAAG
GGGCACCGGC CCGGTGAGCT CGTGTTGCAC GCGCTCGACC CGTTGGTGCG TCGACTTCTG
GCCGGAATCA GTGCCACGGG CACTGACTTC GACGTGCTGA GTCGGGGCCA GCGCGCGTGG
GAGCAGAAGG CGTGGGCCGA GACCATGCGG ATCGCCGAAC GAGTGCTCGG CACGGCGAGC
GCCGGCGCCT TCATCGGCCG CGAGGTCGCC GACAAAGGCA AGAAGGACGG CAAGAAGGTC
CTGTACTCGC TGGGTACGGC GGAGCGCGAT TTCCGCGCCC GGCTCGCCCG AATCCTTCCT
CGGGCCGCCG AACACCGCCG GGAAGCGAAA CCGGAGCTGG GCGTCGCATC TTCGGGCGCG
TCGACACAAG GGCAGGGGTC ATGA
 
Protein sequence
MRCVTDEYNL LTQPWLPIRH RHSGALEAVG IAEALLRSHE LADLVVDVPT QVPALLRQVL 
LPVMVDALGP PTTREGWSKR FAAGRFTDEE RDRLSEYFDQ YRDRFALFHD TRPFAQVAGL
RTPKGETKGT AVLVATAASG NNVPLFTSRT DGDPFPLTPG EAARWLLHTQ CWDTAAIKSG
AEGDPKVKAG KTTGNPTGPL GQLGVVVPVG RSLYETLLLN TPVHPEDMWG VPQWKRDPPF
GPEWDTYAPQ GLLELWTWQS RRVRLSPEQT GDGQRVCRVV LTAGDRISVL PEWEPHTTWT
SAPNPKAGAP ARRPRRHAPG KAIWQGMEAL LAVEREEKGK FHTSDLLRQI NSARVDGVIA
DDYPLRVQTY GLLYGNQSAV VEDILHDAMP LPVAALRAEG EVYDLVAEAT EQAEELAQAV
NSLSADLRRA QGADPIPWDK GHRPGELVLH ALDPLVRRLL AGISATGTDF DVLSRGQRAW
EQKAWAETMR IAERVLGTAS AGAFIGREVA DKGKKDGKKV LYSLGTAERD FRARLARILP
RAAEHRREAK PELGVASSGA STQGQGS