Gene Svir_16330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_16330 
Symbol 
ID8386966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1680414 
End bp1682282 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content69% 
IMG OID644975711 
ProductABC-type multidrug transport system, ATPase and permease component 
Protein accessionYP_003133495 
Protein GI257055663 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.867591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAACA CGTGGTCGCT GTTGCGAGGG GCGATGAAGT CGGCCGACGC CCCGAGTGGG 
CTGCGCAAGG GGACGGTACG CCGGGTGGCT CGTTTCGCCC GCCCGCACTG GCGGCGATTG
CTCGTGTTCC TCCTGATCAC GGTGGTCACG GCCGTGCTGG CCGTGACCAC ACCTCTGCTG
GCAGGTCGGG TGGTCGACGC CATCGTCGAC GGGCGTTCCG TCTCGACGGT GGTGTGGCTG
GCCGTGGCCA TCGCGCTGAT CGCCGTGGTG GACGCCGGGC TCGGACTCGC GGAACGGTGG
CAGTCCGCGC ACATCGGTGA GGGGCTCATC CTGGATCTGC GCAAAGCGGT GTTCGAGCAC
GTCCAGCGCA TGCCGATCGC GTTCTTCCAA CGCAGCCGCA CCGGTGCGTT GGTGAGCAGG
CTCAACAACG ACGTCATCGG CGCGCAGCGG ACCTTCACGG CCACGCTCTC CGGCTTGGTC
ACGAACGTCA TCCAGTTGGT GCTCTCACTC GCGGTGATGC TGACCCTGTC GTGGCAGGTC
ACCCTGCTGG CGCTCGTGCT GTTGCCGATG TTCGTGCTGC CCGCGCGGAG GGTGGGCAGG
CGGATGGCCA CCTTGCAACG TGAGTCGGCC GAGCTCAACG CCGCCATGAC CAACCAGATG
ACCGAGCGGT TCTCCGCGCC GGGCGCCACG TTGGTGAAGT TGTTCGGCAG GCCGCGGGTC
GAGGTCGAGG AGTTCGGCAG ACGAGCGGGC CGCGTGCGGG ACATCGGAGT GCGTACCGCC
ATGCTGACCC GCTGGTTCAT GACCAGCCTC ACCCTGGTGT CGGCGTTGGC GCAGGCTCTC
GTCTACGGCC TCGGGGGATG GCTGGCGCTG ACGGGACGGA TCGATGCGGG GACGGTCGTC
GCGCTGGCGT TGCTGCTCAC CCGCCTCTAC ACGCCGCTGA CGGCGTTGGC GAACGCACGG
GTGGACGTCA TGACGGCCCT GGTCTCGTTT GAGCGGGTGT TCGAGATCCT GGACCTGCAG
CCGATGATCA CCGAACGTCG CGATCCCACG CCGATTCCGG AGGGCGGGGT GTCGGTGGAG
TTCGACGACG TACGGTTCGC CTATCCGCCG GCGGACGCCT TCTCCCTCGC CTCGCTCGAG
GAAGTGTCCA CTCTCGACGA TCGAGGTGGG GAGCCGGTGC TGCACGGTGT GAGCTTCCGT
GCCGAACCGG GGCAGATGGT GGCGCTCGTC GGGCCGTCCG GTGCGGGCAA GTCCACCATC
GCCTCGCTGG TGGCACGGCT GTACGACGTG GATTCCGGTG CCGTGCGGTT GTCCGGCGTG
GATGTGCGGG ACACCTCGTT CGCGGCACTG CGCAGTACCG TGGGATTCGT CACGCAGGAC
GGGCACCTGT TCCACGACAC CATTCGGGCC AATCTCGCCT ACGCGCGGCC TGAGGCCACC
GACGCCGAGA TCTGGGAGGT GCTGCGGCGT GCCCGACTGG AGGACCTCGT CCGCTCGCTG
CCCGACGGGC TGGACACCGT GGTGGGCGAA CGCGGCTACC GGCTTTCCGG TGGGGAGCGG
CAACGGCTGA CGATCGCGCG GTTGTTGCTC GCCCGTCCGC GCGTGGTGGT ACTGGACGAG
GCCACTGCCC ACCTGGACTC CGAGTCCGAG GCCGCGGTCT CGGAGGCGTT GGCCGACGCG
TTGCAAGGAC GCACGGCGTT GGTCATCGCT CATCGGCTGT CCACGGTGCG TGCGGCCGAC
CAGATCCTCG TGATCGAGGA CGGGCGTATC GTCGAGCGCG GTACGCATTC CGAGTTGCTC
GCCCACGGCG GCCGGTACGC CGAGCTGCAC CGCACCCAGT TCGACCTCGG CGAACGGTCG
GCGGCATGA
 
Protein sequence
MDNTWSLLRG AMKSADAPSG LRKGTVRRVA RFARPHWRRL LVFLLITVVT AVLAVTTPLL 
AGRVVDAIVD GRSVSTVVWL AVAIALIAVV DAGLGLAERW QSAHIGEGLI LDLRKAVFEH
VQRMPIAFFQ RSRTGALVSR LNNDVIGAQR TFTATLSGLV TNVIQLVLSL AVMLTLSWQV
TLLALVLLPM FVLPARRVGR RMATLQRESA ELNAAMTNQM TERFSAPGAT LVKLFGRPRV
EVEEFGRRAG RVRDIGVRTA MLTRWFMTSL TLVSALAQAL VYGLGGWLAL TGRIDAGTVV
ALALLLTRLY TPLTALANAR VDVMTALVSF ERVFEILDLQ PMITERRDPT PIPEGGVSVE
FDDVRFAYPP ADAFSLASLE EVSTLDDRGG EPVLHGVSFR AEPGQMVALV GPSGAGKSTI
ASLVARLYDV DSGAVRLSGV DVRDTSFAAL RSTVGFVTQD GHLFHDTIRA NLAYARPEAT
DAEIWEVLRR ARLEDLVRSL PDGLDTVVGE RGYRLSGGER QRLTIARLLL ARPRVVVLDE
ATAHLDSESE AAVSEALADA LQGRTALVIA HRLSTVRAAD QILVIEDGRI VERGTHSELL
AHGGRYAELH RTQFDLGERS AA