Gene Svir_15680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_15680 
Symbol 
ID8386901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1611553 
End bp1612476 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content69% 
IMG OID644975646 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_003133430 
Protein GI257055598 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.153254 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCGCGG GGACACCCGC GCCTGCTGTG CCGTCGTTGC GTGCGTTGCT CGATTCGCCC 
CGGCACGAGG TCGTCGCCGT CGTGACCCGG CCCGATGCCC CGGCCGGGCG GGGGCGGAAG
CTGTCGCGTT CGCCCGTCGG CGAGCTCGCC GACGAGCACG GCATCGAAGT GCTCACCCCA
CGGCGTGCCG GGGACGAGGA CTTCCTGGCG CGACTGTCCG AACTCGCGCC CGACGCCTGC
CCTGTGGTCG CCTACGGCGC CCTGTTGCCA CGGTCGGCGC TCGCGGTGCC GCGGCATGGC
TGGATCAATC TGCATTTCTC GCTGTTGCCC GCATGGCGGG GAGCCGCCCC GGTGCAGGCG
GCGATCAAAG CGGGGGACGA GATCACCGGA GCTTCGACGT TCCGTATCGT GCCGGAGCTG
GACGCCGGAC CGGTGTACGG CACCGTCACC GAGCGGATCA GACCGACCGA CACCGCCGGG
GAACTGTTGG ACCGGCTCGC GAAATCAGGG GCCGAACTCC TTCTGTCTAC TTTAGATGGT
ATTGAGGACG GTACCGTCCA GGCTGTTCCC CAGCCTGCCG ACGGTGTGAC GTACGCGCCC
AAGGTGACTG TGGACGATGC CCGGGTGAAT TTCGCCGAAC CGGCGCTGGC GGTGGATCGG
CACATCCGCT CGGTCACCCC CGAGCCCGGT GCCTGGGCGG AGTTTCGGGG GCAGCGGCTC
AAACTCGGAC CCGTCAGGCT CGGTGACGGG GAGTACGAGG GGCTCGCGCC GGGCGAGTTG
GTGGTGGAAC GCAGACGGGT ACTCGTCGGC ACCGCGACGA CGCCCGTCGT GCTGGGCGAG
GTGCAAGCGC AAGGAAAGAA GCGCATGGCC GCCACCGACT GGGCACGCGG CACACGGATC
GAGCAGGGGG AACGTCTGAC ATGA
 
Protein sequence
MFAGTPAPAV PSLRALLDSP RHEVVAVVTR PDAPAGRGRK LSRSPVGELA DEHGIEVLTP 
RRAGDEDFLA RLSELAPDAC PVVAYGALLP RSALAVPRHG WINLHFSLLP AWRGAAPVQA
AIKAGDEITG ASTFRIVPEL DAGPVYGTVT ERIRPTDTAG ELLDRLAKSG AELLLSTLDG
IEDGTVQAVP QPADGVTYAP KVTVDDARVN FAEPALAVDR HIRSVTPEPG AWAEFRGQRL
KLGPVRLGDG EYEGLAPGEL VVERRRVLVG TATTPVVLGE VQAQGKKRMA ATDWARGTRI
EQGERLT