| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_15040 |
|---|
| Symbol | |
|---|
| ID | 8386837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1546459 |
|---|
| End bp | 1547208 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644975582 |
|---|
| Product | conserved hypothetical protein TIGR01033 |
|---|
| Protein accession | YP_003133366 |
|---|
| Protein GI | 257055534 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0217] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.105495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCC ACTCCAAGTG GGCCACCACC AAACACAAGA AGGCCGCCCT CGACGCCAAG
CGTGGCAAGC TGTTCGCGAA ACTTGTCAAG AACATCGAGG TCGCCGCGCG AACCGGCGGG
GGCGACCCCG ATGGCAACCC CACCCTGTAC GACGCCATCC AGAAGGCGAA GAAGAACTCC
GTCCCTCAGG ACAACATCGA GCGTGCGCGC AAGCGTGGTG CCGGTGAGGA AGCCGGTGGT
GCGGACTGGC AGAACATCAT GTACGAGGGG TACGCGCCGG GTGGGGTCGC GGTGCTCATC
GAGTGCCTGA CCGACAACAA GAACCGGGCG GCGTCCGAGG TCCGCACCGC GCTGACGCGG
AACGGCGGTT CGTTGGCCGA CCCCGGCTCG GTGTCCTATC TGTTCAACCG CAAGGGCGTC
GTCATCATGC CCAAGAACGG TGTGTCCGAG GACGACGTGC TGATGGCCGT GCTCGACGCG
GGTGCCGAGG AGGTCAACGA CCTCGGGGAG AACTACGAGA TCATCTCCGA GGCCGGTGAC
ATGGTGGCCG TCCGTACCGC GTTGCAGGAA GCGGGCTACG ACTACGAGTC GGCGGAGGCG
AGCTTCCTGC CCTCGGTGCA CGTGCCGCTC GACGCCGAGA CCGCTCGGAA GGTCTTCCGG
CTGATCGAGG CGCTCGAGGA CTGCGACGAC GTCCAGAACG TGTACTCGAA CTTCGACGTC
AGCGACGAGG TGCTGGCCGA GGTCGGCTGA
|
|---|
| Protein sequence | MAGHSKWATT KHKKAALDAK RGKLFAKLVK NIEVAARTGG GDPDGNPTLY DAIQKAKKNS
VPQDNIERAR KRGAGEEAGG ADWQNIMYEG YAPGGVAVLI ECLTDNKNRA ASEVRTALTR
NGGSLADPGS VSYLFNRKGV VIMPKNGVSE DDVLMAVLDA GAEEVNDLGE NYEIISEAGD
MVAVRTALQE AGYDYESAEA SFLPSVHVPL DAETARKVFR LIEALEDCDD VQNVYSNFDV
SDEVLAEVG
|
|---|
| |