| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_14990 |
|---|
| Symbol | |
|---|
| ID | 8386832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1543384 |
|---|
| End bp | 1544298 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644975578 |
|---|
| Product | pyridoxal biosynthesis lyase PdxS |
|---|
| Protein accession | YP_003133362 |
|---|
| Protein GI | 257055530 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0214] Pyridoxine biosynthesis enzyme |
|---|
| TIGRFAM ID | [TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGAATC CCCAGGCCAG CACCGTCGTC GAGGCACAGA CCGGCACCGC GCGGGTGAAA
CGTGGCGTGG CGGAGGCGCT CAAAGGCGGC GTGATCATGG ACGTCGTCAC TCCGGAGCAG
GCCAAGATCG CCGAGGACGC CGGTGCGGTC GCCGTGATGG CCCTCGAACG GGTGCCCGCC
GATATCCGTG CCCAGGGTGG TGTGGCTCGC ATGAGCGATC CCGACCTCAT CGAGAGCATC
ATGTCGGCGG TCTCGATCCC GGTCATGGCG AAGGTTCGGA TCGGCCATTT CGTCGAGGCG
CAGGTGTTGC AGTCGCTCGG TGTGGACTAC ATCGACGAGT CCGAGGTGCT CACGCCCGCC
GACTACGCCC ATCACATCGA CAAATGGGCC TTCACCGTGC CGTTCGTGTG CGGGGCCACG
AACCTGGGAG AGGCGTTGCG TCGCATCGCC GAAGGCGCCG CGCTGATCCG CTCGAAGGGC
GAGGCCGGGA CGGGCGACGT GTCGAACGCG GCCACGCACA TGCGGCAGAT CCGCACCGAG
ATCCGCCGGT TGTCGGCGCT GCCGGAGGAC GAGTTGTATG TGGCGGCCAA GGAGCTGCAG
GCCCCGTACG AGTTGGTCAA GGAGGTCGCC GAGACCGGCA AGTTGCCCGT GACGCTGTTC
ACCGCCGGGG GTATCGCCAC ACCCGCCGAT GCGGCCATGA TGATGCAGCT CGGCGCTGAA
GGGGTGTTCG TCGGCTCGGG CATCTTCAAA TCGGGTGACC CGGCCAAACG CGCCGAGGCC
ATCGTCAAGG CCACCGCGTC CTACGACGAT CCCGACGTCA TCGCGAAGGT GTCGCGGGGG
CTTGGTGAGG CGATGGTGGG GATCAACGTC GACGACGTGC CCGTGCCGCA CCGCCTTTCC
GAACGCGGCT GGTGA
|
|---|
| Protein sequence | MSNPQASTVV EAQTGTARVK RGVAEALKGG VIMDVVTPEQ AKIAEDAGAV AVMALERVPA
DIRAQGGVAR MSDPDLIESI MSAVSIPVMA KVRIGHFVEA QVLQSLGVDY IDESEVLTPA
DYAHHIDKWA FTVPFVCGAT NLGEALRRIA EGAALIRSKG EAGTGDVSNA ATHMRQIRTE
IRRLSALPED ELYVAAKELQ APYELVKEVA ETGKLPVTLF TAGGIATPAD AAMMMQLGAE
GVFVGSGIFK SGDPAKRAEA IVKATASYDD PDVIAKVSRG LGEAMVGINV DDVPVPHRLS
ERGW
|
|---|
| |