Gene Svir_14290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_14290 
Symbol 
ID8386762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1471222 
End bp1472922 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content65% 
IMG OID644975508 
ProductSSS sodium solute transporter 
Protein accessionYP_003133296 
Protein GI257055464 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0591] Na+/proline symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCATGTCC TCGCTGAAGC GGACCTGCGG CTTGATGCCA ACGCGATCGA CTACCTGTTG 
CTCGCTCTCT ATTTCGCACT CGTACTCGGT ATCGGCTACC TGGCCCGCAA GCAGGTATCG
ACGAGTCTCG ATTTCTTCCT GTCCGGACGT TCGCTTCCGG CGTGGGTGAC GGGCCTGGCC
TTCGTGGCCG CCAACCTCGG CGCGATCGAG GTCATGGGCA TGTCGGCCAA CGGCGCCCAG
TACGGCATGC CGACCGCGCA TTACTTCTGG ATCGGCGCGG TACCGGCCAT GCTGTTCCTC
GGCATCGTGA TGATGCCGTT CTACTACGGT TCGAAGGTGC GCAGCGTCCC CGAATTCATG
CTGCGCCGGT TCGGTAAACC AGCGCACCTG GTCAACGGCA TCAGTTTCGC ACTGGCGCAG
ATCCTCATCG CGGGCGCGAA CCTCTACCTG CTCGCCTTGG TGATCAACCT GCTGTTGGGT
TGGCCGATCT GGGTGTCGGT GCTCCTGGCC GCAGTGATCG TGCTCGCCTA CACCGCCCTC
GGCGGTCTGT CCGCCGCCAT CTACAACGAG GTGCTGCAGT TCTTCGTCAT CGTGGCGGCC
TTGTTGCCGC TGACGATCGT CGGTCTCGCC AAGGTCGGCG GCTGGCAGGG GCTGGTGGAC
AAGGTGTCCG CCGGACCGGG TGGGGCCGAA CAGCTGAACT CCTGGCCCGG TAACCAGCTC
ACCGGGTTCG GCAGCAACTT CCTGTCCGTG CTGGGCCTCG TGTTCGGCCT GGGCTTCGTG
CTGTCGTTCG GCTACTGGAC GACCAACTTC GTCGAGGTAC AGCGGGCGAT GGCGTCGAAG
AGCATGTCGG CGGCCCGTCG CACGCCGATC ATCGGCGCGA TCCCGAAGAT GCTGGTCCCC
TTCATCGTGA TCATCCCCGG CATGATCGCG GGCGTCAGCG TCTCCGAACT GGCCGGCGAC
AACAAGGCCG CACTGATGCG GGGCGAGGAA GCCCCCAGCG GCGCCACGTT CAACGACGCG
CTCCTGCTGC TCATGCGCGA TCTGCTGCCG AACGGCATGC TCGGCATCGC CATCGCCGGT
CTGCTCGCGT CGTTCATGGC CGGTATGGCG GCGAACCTGA GCTCGTTCAA CACGGTGTTC
ACCTACGACA TCTGGCAGTC CTACATCGTC AAGGACAAGT CGGACGGCTA CTACCTCAGG
GTGGGCCGGG TCATCACCGT GATCGCGACG GTGTTGGCCA TCGGCACGGC GTTCATCGCC
GCGTCGTACG CCAACCTGAT GGACTACCTG CAGCAGCTGT TCTCGTTCTT CAACGCACCG
CTGTTCGCGA CGTTCATCCT CGGTATGTTC TGGAAGAGGA TGACGCCCAC GGCCGGTTGG
GCGGGCCTGG TCAGCGGTAC CGCGGCGGCG GTCGGTGTGT TCCTGCTGGC CGAGACGGGC
GTGTGGGACC TGCCGGGGCA GGGCGCCTCG TTCGTCGGCG CGGGGGCCGC TTTCGTGGTC
GACGTCGTGG TCAGTGTGGC GGTCACCTAC GCCACGCAAC CGAAGCCGGA GGCACAGCTG
GTGGGGTTGG TTTACTCTCT GACCCCGAAG GAGAGCCTGA GGCACTCCAC CACCGGTGAG
GATGCCGGCT GGTACCGCCG TCCGGGGCTG CTGGCGGGCA TCGTGCTGGC CGTCACCATC
CTGTTCAACA TCATCTTCTA G
 
Protein sequence
MHVLAEADLR LDANAIDYLL LALYFALVLG IGYLARKQVS TSLDFFLSGR SLPAWVTGLA 
FVAANLGAIE VMGMSANGAQ YGMPTAHYFW IGAVPAMLFL GIVMMPFYYG SKVRSVPEFM
LRRFGKPAHL VNGISFALAQ ILIAGANLYL LALVINLLLG WPIWVSVLLA AVIVLAYTAL
GGLSAAIYNE VLQFFVIVAA LLPLTIVGLA KVGGWQGLVD KVSAGPGGAE QLNSWPGNQL
TGFGSNFLSV LGLVFGLGFV LSFGYWTTNF VEVQRAMASK SMSAARRTPI IGAIPKMLVP
FIVIIPGMIA GVSVSELAGD NKAALMRGEE APSGATFNDA LLLLMRDLLP NGMLGIAIAG
LLASFMAGMA ANLSSFNTVF TYDIWQSYIV KDKSDGYYLR VGRVITVIAT VLAIGTAFIA
ASYANLMDYL QQLFSFFNAP LFATFILGMF WKRMTPTAGW AGLVSGTAAA VGVFLLAETG
VWDLPGQGAS FVGAGAAFVV DVVVSVAVTY ATQPKPEAQL VGLVYSLTPK ESLRHSTTGE
DAGWYRRPGL LAGIVLAVTI LFNIIF