Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_14290 |
Symbol | |
ID | 8386762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 1471222 |
End bp | 1472922 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644975508 |
Product | SSS sodium solute transporter |
Protein accession | YP_003133296 |
Protein GI | 257055464 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCATGTCC TCGCTGAAGC GGACCTGCGG CTTGATGCCA ACGCGATCGA CTACCTGTTG CTCGCTCTCT ATTTCGCACT CGTACTCGGT ATCGGCTACC TGGCCCGCAA GCAGGTATCG ACGAGTCTCG ATTTCTTCCT GTCCGGACGT TCGCTTCCGG CGTGGGTGAC GGGCCTGGCC TTCGTGGCCG CCAACCTCGG CGCGATCGAG GTCATGGGCA TGTCGGCCAA CGGCGCCCAG TACGGCATGC CGACCGCGCA TTACTTCTGG ATCGGCGCGG TACCGGCCAT GCTGTTCCTC GGCATCGTGA TGATGCCGTT CTACTACGGT TCGAAGGTGC GCAGCGTCCC CGAATTCATG CTGCGCCGGT TCGGTAAACC AGCGCACCTG GTCAACGGCA TCAGTTTCGC ACTGGCGCAG ATCCTCATCG CGGGCGCGAA CCTCTACCTG CTCGCCTTGG TGATCAACCT GCTGTTGGGT TGGCCGATCT GGGTGTCGGT GCTCCTGGCC GCAGTGATCG TGCTCGCCTA CACCGCCCTC GGCGGTCTGT CCGCCGCCAT CTACAACGAG GTGCTGCAGT TCTTCGTCAT CGTGGCGGCC TTGTTGCCGC TGACGATCGT CGGTCTCGCC AAGGTCGGCG GCTGGCAGGG GCTGGTGGAC AAGGTGTCCG CCGGACCGGG TGGGGCCGAA CAGCTGAACT CCTGGCCCGG TAACCAGCTC ACCGGGTTCG GCAGCAACTT CCTGTCCGTG CTGGGCCTCG TGTTCGGCCT GGGCTTCGTG CTGTCGTTCG GCTACTGGAC GACCAACTTC GTCGAGGTAC AGCGGGCGAT GGCGTCGAAG AGCATGTCGG CGGCCCGTCG CACGCCGATC ATCGGCGCGA TCCCGAAGAT GCTGGTCCCC TTCATCGTGA TCATCCCCGG CATGATCGCG GGCGTCAGCG TCTCCGAACT GGCCGGCGAC AACAAGGCCG CACTGATGCG GGGCGAGGAA GCCCCCAGCG GCGCCACGTT CAACGACGCG CTCCTGCTGC TCATGCGCGA TCTGCTGCCG AACGGCATGC TCGGCATCGC CATCGCCGGT CTGCTCGCGT CGTTCATGGC CGGTATGGCG GCGAACCTGA GCTCGTTCAA CACGGTGTTC ACCTACGACA TCTGGCAGTC CTACATCGTC AAGGACAAGT CGGACGGCTA CTACCTCAGG GTGGGCCGGG TCATCACCGT GATCGCGACG GTGTTGGCCA TCGGCACGGC GTTCATCGCC GCGTCGTACG CCAACCTGAT GGACTACCTG CAGCAGCTGT TCTCGTTCTT CAACGCACCG CTGTTCGCGA CGTTCATCCT CGGTATGTTC TGGAAGAGGA TGACGCCCAC GGCCGGTTGG GCGGGCCTGG TCAGCGGTAC CGCGGCGGCG GTCGGTGTGT TCCTGCTGGC CGAGACGGGC GTGTGGGACC TGCCGGGGCA GGGCGCCTCG TTCGTCGGCG CGGGGGCCGC TTTCGTGGTC GACGTCGTGG TCAGTGTGGC GGTCACCTAC GCCACGCAAC CGAAGCCGGA GGCACAGCTG GTGGGGTTGG TTTACTCTCT GACCCCGAAG GAGAGCCTGA GGCACTCCAC CACCGGTGAG GATGCCGGCT GGTACCGCCG TCCGGGGCTG CTGGCGGGCA TCGTGCTGGC CGTCACCATC CTGTTCAACA TCATCTTCTA G
|
Protein sequence | MHVLAEADLR LDANAIDYLL LALYFALVLG IGYLARKQVS TSLDFFLSGR SLPAWVTGLA FVAANLGAIE VMGMSANGAQ YGMPTAHYFW IGAVPAMLFL GIVMMPFYYG SKVRSVPEFM LRRFGKPAHL VNGISFALAQ ILIAGANLYL LALVINLLLG WPIWVSVLLA AVIVLAYTAL GGLSAAIYNE VLQFFVIVAA LLPLTIVGLA KVGGWQGLVD KVSAGPGGAE QLNSWPGNQL TGFGSNFLSV LGLVFGLGFV LSFGYWTTNF VEVQRAMASK SMSAARRTPI IGAIPKMLVP FIVIIPGMIA GVSVSELAGD NKAALMRGEE APSGATFNDA LLLLMRDLLP NGMLGIAIAG LLASFMAGMA ANLSSFNTVF TYDIWQSYIV KDKSDGYYLR VGRVITVIAT VLAIGTAFIA ASYANLMDYL QQLFSFFNAP LFATFILGMF WKRMTPTAGW AGLVSGTAAA VGVFLLAETG VWDLPGQGAS FVGAGAAFVV DVVVSVAVTY ATQPKPEAQL VGLVYSLTPK ESLRHSTTGE DAGWYRRPGL LAGIVLAVTI LFNIIF
|
| |