Gene Svir_13860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_13860 
Symbol 
ID8386721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1428340 
End bp1430838 
Gene Length2499 bp 
Protein Length832 aa 
Translation table11 
GC content67% 
IMG OID644975469 
ProductCRISPR-associated helicase Cas3 
Protein accessionYP_003133258 
Protein GI257055426 
COG category[R] General function prediction only 
COG ID[COG1203] Predicted helicases 
TIGRFAM ID[TIGR01587] CRISPR-associated helicase Cas3 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.234704 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.222328 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCGC CCTGGGGGAA ACGGCGCGGG CTTGAAGCTG CTGACGGCAG CCCGCGCGAA 
TATCCGCTCG TCTGCCACCT CTGCGACACC GCCGCCGCCG CGCTCGTGCT CTGGGAGGAC
CACACCGCGC CCGGTGTCCG CGAGTGGGTT GCCAACGAAC TCGACATGAC CCCACACGAG
GCAGGACGGT TCATTGCCTA CCTCGCCGGA CTGCACGACA TCGGTAAAAC CACCCCTGGT
TTCCAGTGTC AGGACAGCAC TGACAAAAAC AGCGTCGACA CAATCCGGCA CGAGATCGCG
AGCTATCTGG CCGTGCCCAC ACTCATCGAG CACCCCGAAA AGCCAGCCTC GTTCATCTCA
GGTATCGCGC ACCGGATCGG GGAAATCCTC GGCGGCCACC ACGGCGTCTT CCCACCCGTC
GACCGCCGCA CCCGCAAACC GTTACACGTA CCTGAACTCG GCGGCCCCGA GTGGGACACC
GCACGGCGCA CTATCCACAC CGAACTGAGA GCTCACCTCA ACCCCACCCT GCCCACATGC
CTGCCGCAGC CTGTCGCAGC AGCGCTCACC GGGCTGGTGA TCGTGGCCGA CTGGATCGTC
TCCGATGCCC GCTGGATCCT CGAATCACAG TGGGACGCTC CCATCGGTAT CGCCGCGCGC
TGGGAACACA CCCTGAACGC CACCCGCGCC CGTGTCCACC AGCTCGGGCT CGCCCACCCC
ACCCCCGGAC CGCTGGATCT CGCCCGGATC CTCGGCGGCC CCAACCGGTC CCCGAACCCG
CTCCAGCAGT CGATCATCGA CGACTTCCAC CCCACCGGGC CCGGCCTGTT AACGATCGCC
ACCCCCACCG GGTCCGGGAA AACCGAAACC GCGTGGATCG CCGCCCACAA ACTCGCCACC
GCCACCGACA GGTACGGCAC CCTCATGTGC CTACCCACGC AGGCCACCAC GAACTCGATG
TGGGCCCGCA CCAGCGCCAC CGTCGACAAC ACGGTCACCC TCGCCCACTC CATGGCCGTG
TTCCACAGCC CCTACCGCCA CTACTCCACC CACGACCCCG ACGCGTTGCG GTGGCTCAAC
GGCAGGAAAC GCCCGATGCT GTCCGCCCAC GCGGTCGTCA CCATCGACCA ACTCCTCGCC
GCCGGGCTCA CCGCGAAACA CAACATGGTC CGCCAATGGG CGCTCACCGG CAAGGTCGTG
ATCGTGGACG AGGTCCACGC CTGCGATATC TACATGCTCA CCGTTCTCGC CCGCGTCCTT
GAATGGTTGG GCCGCCTGGG CGTGCCGGTA GTGCTGCTGT CAGCGACGCT TCCTGGGCAT
GTGTCGCGGC AGCTCACCGC CGCCTACCTC ACCGGTGCAG GATGCTCATC CCCGAACCCT
CGCCCTGTGG CCTACCCGGG TTGGGTGTGG CACCCCATCA CCGGTAGCCC GGTCGAACCA
CGGAACCGAG CACAAATCAG CAGAGCGCAC GCTCGCACCG CCCGCGTCAC CGTCACCCAC
TACACCGGCC CCGTCGAGGC CGCCGCCGCC AACGCCATCC AGCCCGTCGC TAAAAACGGC
GGGTGCGCAG CAGTGGTGTG CTCCACCGTC GACACCGCCC AACGCATCTA CATCCGGATT
CGCGACACCT ACCCCGGCAT GTGCGTGTGG CTGCTGCATT CCCGGTTCCC CCACGCCCAC
CGCGCTGAGA TCGAAGCCGA CATTGTGTCG ATGTTCGGCC CAGCCGGCGA CCGCCCGGAC
GGAGTTGTGG TGGCCACCAG CGTCATCGAG CAGTCCCTCG ATGTCGACTT CGACGTGATG
ATCTCCGAAC TCGCCCCGGT GGCGTTGCTG TTCCAGCGCC TCGGACGCGT GTGGCGGCAT
GACAATCCCC GCCCCGCGTG GGCCACCGAA CCCACCCTCC ACATCCTCGA CCGTGACGGG
GCACTGCCAT ACGGCCCGGC CGCGATCTAC CGCGACTCCC TGCGCGAACT CCGCGCCACC
CGAGCTGCGC TCGCCGGCCA CGGAACCCTG ATTCGGATCC CTGAGGACGT GTCCACGCTC
GTGCAGCAAG TCCACAACCG CGACCTCGAT GATCTTAACG ACCTCCAGTC TCAGCGGGAA
CGCCGTGACG CCGGATTGGC CAACATCGTC GCCATCCCCA ACCCCCACCA GCTCGGTCAC
CTGGAAACAA TGACCTGCCC CGACGTCGAC GACGCCACCG TGGCCGCCCG CCTAGGCATG
GACACCATTC GCCTCATCCC CGCCCACATC GGAATCGACG GCCGCTACTA CCTCGACCCC
AAACACGAAA TCCCCTACCC ACAAGGCCGT CCACCACACC GGTTCGTTGA AGCCGCGCTC
AACGCGAGCA TCACCTGCCC CGCCCACTGG GTGCGTGACT GGCCCACCAA CCCCGACTGG
GCGGGCACCC ACCTCGCCGA CACTGTGCTG TTCCCCAACA CCTGCCATGA CGGGCTGCGC
CTGGACCCCG AACTCGGCCT CGTGAAAGGA AACCAGTGA
 
Protein sequence
MQAPWGKRRG LEAADGSPRE YPLVCHLCDT AAAALVLWED HTAPGVREWV ANELDMTPHE 
AGRFIAYLAG LHDIGKTTPG FQCQDSTDKN SVDTIRHEIA SYLAVPTLIE HPEKPASFIS
GIAHRIGEIL GGHHGVFPPV DRRTRKPLHV PELGGPEWDT ARRTIHTELR AHLNPTLPTC
LPQPVAAALT GLVIVADWIV SDARWILESQ WDAPIGIAAR WEHTLNATRA RVHQLGLAHP
TPGPLDLARI LGGPNRSPNP LQQSIIDDFH PTGPGLLTIA TPTGSGKTET AWIAAHKLAT
ATDRYGTLMC LPTQATTNSM WARTSATVDN TVTLAHSMAV FHSPYRHYST HDPDALRWLN
GRKRPMLSAH AVVTIDQLLA AGLTAKHNMV RQWALTGKVV IVDEVHACDI YMLTVLARVL
EWLGRLGVPV VLLSATLPGH VSRQLTAAYL TGAGCSSPNP RPVAYPGWVW HPITGSPVEP
RNRAQISRAH ARTARVTVTH YTGPVEAAAA NAIQPVAKNG GCAAVVCSTV DTAQRIYIRI
RDTYPGMCVW LLHSRFPHAH RAEIEADIVS MFGPAGDRPD GVVVATSVIE QSLDVDFDVM
ISELAPVALL FQRLGRVWRH DNPRPAWATE PTLHILDRDG ALPYGPAAIY RDSLRELRAT
RAALAGHGTL IRIPEDVSTL VQQVHNRDLD DLNDLQSQRE RRDAGLANIV AIPNPHQLGH
LETMTCPDVD DATVAARLGM DTIRLIPAHI GIDGRYYLDP KHEIPYPQGR PPHRFVEAAL
NASITCPAHW VRDWPTNPDW AGTHLADTVL FPNTCHDGLR LDPELGLVKG NQ