| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_13440 |
|---|
| Symbol | |
|---|
| ID | 8386680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1387182 |
|---|
| End bp | 1388801 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644975428 |
|---|
| Product | acyl-CoA synthetase |
|---|
| Protein accession | YP_003133218 |
|---|
| Protein GI | 257055386 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.921764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGGC CGACCGTGGC CGGTGTGATG AGTCGTGCGG TGGAGGCAGT ACGCAGCCTC
GCGGTGTTGT ATCGCGCGGG ACTGGCCCCG ATACCCCGTC TCGACGAGGG TATTCGGTCG
ATCATCAGCA CTCGGCGCTA CGGTCCGCTG GCCGGTTCGG TCAAGATCGC CGCCCGCCGT
GATCCCCATT CGGTCGGACT CGTCGACGAG CGCGGATCAC TGACGTACAC ACAGCTCGAC
CTGCGCTCCA ACGCTCTTGC GCGGGCATGG GCCGCACGCG GTGTGCGGCC GGGCACCACC
GTCGCCGTGC TGTGCCGCGA CCACCGTGGA CTCGTCCTCG CCCTCCTTGC GGCGGGCAAA
CTGGGTGCGC CCGTACTCCT GCTCAACACC GGATTCGCCA AGCCCCAGCT CACCGATGTC
GCCGCCCGGG AGAAGGTACG CGTCCTCGTG CACGACGAGG AGTTCACCGA CCTGCTCGGC
GACATCGCGG GAGTCGACCG GTACCTCGCG TGGACGGACT CCACCCCGCC CGCCGACGTG
CCGACGCTCG ACGACATCAT CGCGGGCAGC GACGACCATC CGCTTCCGGC CCCACCGAAA
CCCGGTGGTC TCGTGCTGCT CACCAGCGGC ACCACCGGAA CACCGAAAGG CGCTCCTCGG
CCGAAGGTCT CGCCGTTCGA CTCCGCCCAG TTCCTCGATC GCATCCCACT GCGTGTCGGT
GAGGCCACCT TCATGGGCGC CCCACTGTTC CACGCCACCG GGATCTCCCA GTTCATCTTG
TCGTGCGCGC TCGGCTGCAC CGTGGTGGTG CGGAGGAAAT TCGACCCCGA GGCCACCTTG
CGCGGGGTCG CCGAGCATCG GTGTACGGCG TTGGTGCTGG TGCCCACGAT GCTGCAGCGC
ATTCTCGACC TCGGGCCTGA GGTGATCGGA CGGTACGACA CCTCGAGTCT GCGCATCATC
TTCGTCGCGG GGTCCGCGCT TGCGCCCGAG GTCGGCAACC GGGCCACGGA ACTCTTCGGA
GACGTGATCC ACAATTTGTA CGGTTCCACG GAGGTCGCCG TCGCGACCGT GGCCACGCCG
GAGGATTGGA AGCGAGCGCC AGGCACGGTG GGCAAACCCC CGGTCGGTTG CCGGGTCGAG
CTCTACGACG AGCACGGTCG GCGCATCACC AGGCCGTACG TCACGGGAAG GGTGTTCGTC
GGCAGTGGAC TCGCGTTCGA GGGGTACACC GACGGCAGGA CCAAGGAGAC GATCAACGGC
CTGCTCGCCA CCGGCGACGT CGGTCATTTC GACGCCGACG GGCTGCTGTT CATCGACGGC
CGGGACGACG AGATGATCGT CTCGGGTGGG GAGAACGTCT ATCCCGTCGA GGTGGAGAAC
GTGCTCGTCG AGCATCCCGA CGTGCGGGAG GCCGCGGTGA TCGGAGTGCC CGACGACGAG
TTCGGTCAGC GGCTCAAGGC GTTCGTCGTG GTCAAGGAGG GGGCCGAGTT GGACGCCGAC
GCCGTACGGG AGCACGTGAG GAACAATCTG GCCCGGTACA AGGTCCCGCG GGATGTCGAG
TTCCTGGACC AGCTCCCACG TAACGCCACC GGCAAAGTCC TGCGCAACAG TCTTGAGTAG
|
|---|
| Protein sequence | MGRPTVAGVM SRAVEAVRSL AVLYRAGLAP IPRLDEGIRS IISTRRYGPL AGSVKIAARR
DPHSVGLVDE RGSLTYTQLD LRSNALARAW AARGVRPGTT VAVLCRDHRG LVLALLAAGK
LGAPVLLLNT GFAKPQLTDV AAREKVRVLV HDEEFTDLLG DIAGVDRYLA WTDSTPPADV
PTLDDIIAGS DDHPLPAPPK PGGLVLLTSG TTGTPKGAPR PKVSPFDSAQ FLDRIPLRVG
EATFMGAPLF HATGISQFIL SCALGCTVVV RRKFDPEATL RGVAEHRCTA LVLVPTMLQR
ILDLGPEVIG RYDTSSLRII FVAGSALAPE VGNRATELFG DVIHNLYGST EVAVATVATP
EDWKRAPGTV GKPPVGCRVE LYDEHGRRIT RPYVTGRVFV GSGLAFEGYT DGRTKETING
LLATGDVGHF DADGLLFIDG RDDEMIVSGG ENVYPVEVEN VLVEHPDVRE AAVIGVPDDE
FGQRLKAFVV VKEGAELDAD AVREHVRNNL ARYKVPRDVE FLDQLPRNAT GKVLRNSLE
|
|---|
| |