| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_13420 |
|---|
| Symbol | |
|---|
| ID | 8386678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1381359 |
|---|
| End bp | 1385255 |
|---|
| Gene Length | 3897 bp |
|---|
| Protein Length | 1298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644975426 |
|---|
| Product | ATP-dependent helicase HrpA |
|---|
| Protein accession | YP_003133216 |
|---|
| Protein GI | 257055384 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCT CCCGTACGTC GCCTTCCATC GACGAGCTGC GTTCCCGCCT GTCCGGGCTC
ATGGTGCGTG ACGCGCACCG GATGCGCCGT CGGCTGGACG GGCTCCGCAA GGCCCGCCGA
CAGCCGAGAA CCGACATCCT GACGAGCATC GCCACCGACA TCGACAAGGC CGAGGAGCGG
GTTCGGCGCC GTCGGGAGTC GGTTCCCGAG CTGACGTACC CGGAGGAACT GCCCGTCAGC
CAACGCAAGG ACGACCTTGC GGAGGTGATC CGTGACAACC AGGTGGTGAT CGTCGCGGGG
GAGACGGGAT CGGGCAAGAC GACACAGCTA CCCAAGATCT GCCTCGAACT GGGTCTCGGG
GTGCGCGGGC AGATCGGACA CACCCAGCCG CGCAGGATCG CCGCTCGGAC GGTGGCCGAA
CGCATCGCGG CCGAACTCAA GACCGACCTC GGCACGATCG TCGGTTACAA GGTGCGGTTC
ACCGACACCT CCGGTGACGA CACCTTGGTC AAACTCATGA CCGACGGCAT CCTGCTCGCC
GAGATCCAGC ACGACCGCCT GCTGCGCCAG TACGACACGA TCATCATCGA CGAGGCGCAC
GAGCGCAGTC TCAACATCGA CTTCCTGCTC GGCTACCTCA AACGCATCCT GCCGCGCAGA
CCCGACCTCA AGGTGATCAT CACCTCGGCC ACCATCGACC CGGAGCGGTT CTCGCGGCAC
TTCGACGACG CACCGATCGT GGAGGTCTCC GGACGCACCT ACCCGGTCGA GGTGCGCTAC
CGGCCCATCG TGGACCCCGA CGATCCCGAC GCCGACCCCG ACCGCGACCA GGTGCAGGCC
ATCTGCGACG CGGTCACCGA GTTGCGGGCC GAAGGCCCCG GCGACATCCT CGTGTTCCTC
TCCGGTGAGC GGGAGATCCG GGACGCCCAT GAGGCACTGG CCGCGATGGA GTTGCCGAAC
ACCGAGATCC TGCCGCTGTA CGCGCGGTTG TCGGCCGCCG ACCAACATCG CGTCTTTCAG
CCGCATCGCG GGCGTCGGAT CGTGCTGGCC ACCAACGTGG CCGAGACGTC GTTGACGGTT
CCGGGTATCA AGTACGTCAT CGACACGGGC ACGGCTCGTA TCTCACGCTA CAGCCACCGC
ACGAAGGTTC AGCGGCTTCC CATCGAGCCG ATCTCGCAGG CGTCGGCGAA CCAGCGCAAA
GGCCGTTGCG GTCGTACCTC CGACGGCATC TGCATCCGGC TGTATTCGGA GGAGGACTTC
GAGTCCCGCC CGGAGTTCAC CGACCCCGAG ATCCTGCGTA CCAACCTGGC CTCGGTGATC
CTGCAGATGA TCTCGTTGGG GCTCGGGGAC ATCGGCGCGT TCCCGTTCGT GGACCCACCG
GACCGCAGGC AGATCACCGC CGGGGTCCAG CTGCTGACCG AACTCGGTGC GCTCGACGAA
TCGGGCAAGG GCCTGACGCC CGTGGGACGA CAGTTGGCGC AGCTGCCCGT CGACCCCCGG
ATGGGGCGGA TGATCGTGGA GGCGGCGAGG AACGGCTGCG TGCGTGAGGT GATGGTCATC
GCCGCCGCAC TGTCCATCCA AGACCCCCGG GAACGTCCCG CGGAGAAGCA GGAGCACGCC
GATCAGTTGC ATGCCCGCTT CCGGGACCCG AACTCCGACT TTTTGGCCTA CCTCAACCTG
TGGAACTACC TCCGGGAACA ACAGAAGGCG CTGTCCAACA ACCAGTTCCG CAAGCTGTGC
CGGGCCGAAT ACCTCAACTA CCTGCGCATC CGCGAATGGC AGGACGTCCA CAGCCAGCTC
CGGCAACTGG TCAAACAGCT CGGGTTCACG TTGAACAGCG TTCCCGCCGA CTCCCAGCGC
ATCCATACGT CGCTGCTGGC CGGGCTGTTG TCCCACGTCG GTCTCAAGGA CCCGGCGAAG
GGTGATTACC TCGGCGCCCG AGGGACCCGG TTCGCGGTGT TCCCCGGTTC GGCGCTGTTC
AAGAAGCAGC CGCGGTGGGT CGCGTCGGCC GAGATCGTGG AGACCTCGCG GCTGTGGGCG
CGCGTCAACG CCCGAGTGGA GCCGGAGTGG ATCGAGCCGC TGGCCCAGCA CTTGGTCAAA
CGCACGTACT CGGAACCGCA CTGGGAACGT AAGCGCGGTG CCGTGATGGC GTACGAACGG
GTCACCCTCT ACGGCATCCC GCTCGTGGTC GGTCGCAAGG TCAACTACGG TCGGATCGAC
CCGGAGACGT CGCGGGAGCT GTTCATCCGA CACGCCCTCG TCGAGGGTGA CTGGGACACC
GACCACCGTT TCTTCCACGA CAACCGCGCG CTGCTGGACG AGGTGGCCGA CCTCGAGAAC
CGCGCCCGTC GCCGTGACAT CGTGGTCGAC GACCAGACGC TGTTCGACTT CTACGACGAG
CGCATCGGTG ACGAGGTGGT CTCGGCTCGG CACTTCGACA CCTGGTGGAA GAAGACGCGG
CGAACGCAGC CCGACCTACT CAACTTCGAG AAGGCCATGC TCGTCACCGC GAACGCCGAG
GACGTGCGCG AGGCCGACTA TCCCGACACG TGGCAACAGG GGTCCCTGCG GTTCGCGTTG
ACCTACCAGT TCGAGCCGGG GGCGGACGCC GACGGCGTGA CCGTCCACAT CCCCCTCGCG
GTGCTCAACC AGGTCAGTGG CGAGGGTTTC GAATGGCAGG TGCCCGGTCT CCGCGAGGAA
CTCGTGACGG CGCTGATCAA ATCGTTGCCC AAGCCGTTGC GACGGCAGCT CGTGCCCGCG
CCCGACACGG CCCGGCAGGT GTTGGCCGCC GTCAGTCCGT CCGACGGTCC GCTGCTCGAC
GTGTTGAGTC GGGAGTTGCA ACGCTTGCGT GGGGTGACGA TCCCCCGGGA GGAGTGGCAG
TGGTCGGCTG TGCCGGACTA CCTGCGGATG ACTTTCCGGG TGGTGGATGA GCGGGACCGC
ACGGTGGCCA AGGGCAAGGA CCTGGAGGCC CTGCGGGAGC GGCTCGTCGA CCGGTTGCGC
CAGACCATCT CGGCCGCCGC CGACGAGCTG GAACGGTCCG GTCTGCGCAC GCCGGAGTTC
GGTACGTTGC CCAAGGAGTT CTCGGCCCGG CGCCGCGGTC ACGAGGTGAA GGCGTATCCG
GCCTTGGTCG ACGAGGGCGA CAGCGTGGCG GTGCGCATGA TGGACACGCC ACAGCAGCAG
CGTGCCGCGA TGTGGCGGGG CACGCGCCGA CTGTTGCGGC TGAACGTGCC GTCACCGGCC
AAATACATCA ACCGGAACCT GCCCAATCAG GCGAAACTCG TGCTGACCCG CAATCCGCAC
GGTGGGGTGG CCGCGTTGGT GGACGACTGT GTGAACTGCG CGGTGGACAA GTTGATGGCC
GACGCGGGCG GGCCGGCGTG GGACGAGCAG GGTTTCGCCG CGTTGCAGGA GCGGGTGCGG
GCAGGTCTCA ACGGGACCAC GCTCACCGTG CTGCGGACGG TGGAGGAGAT CCTGCGTGCG
GTGCACGACG TGGAGGCCCG GCTGGAGTCC ATGCGCGGGG ATGCGTTGGC CGAGTCCCTG
GCCGACATCC GTGCGCATCT GTCGGGGCTC GTGCACGCCG GATTCGTCAC CAAGACCGGT
TTCGACCGCC TCGGAGACCT GGTGCGGTAC GTGCGTGGCA TCGAACGCAG GCTCGACAAG
CTGCCCACCG ACCCGGCGCG TGATGTGCAG CGGCTCCGCG ACATCGCATG GTTGCAGGAG
GAATACCGAG CGGTGGTGGA CGCCCTGCCG CCTCGGGTCG AACCGAGCCC GCAGCTGGCC
GAGATCCCCT GGATGATCGA GGAACTGCGG ATCAGTTTCT TCGCCCAAAC CCTGGGCACG
GCCTATCCGG TCTCGATGAA ACGGGTTCTG AAGGCGTTGG ACGCCGCCGC TCCCTAG
|
|---|
| Protein sequence | MSSSRTSPSI DELRSRLSGL MVRDAHRMRR RLDGLRKARR QPRTDILTSI ATDIDKAEER
VRRRRESVPE LTYPEELPVS QRKDDLAEVI RDNQVVIVAG ETGSGKTTQL PKICLELGLG
VRGQIGHTQP RRIAARTVAE RIAAELKTDL GTIVGYKVRF TDTSGDDTLV KLMTDGILLA
EIQHDRLLRQ YDTIIIDEAH ERSLNIDFLL GYLKRILPRR PDLKVIITSA TIDPERFSRH
FDDAPIVEVS GRTYPVEVRY RPIVDPDDPD ADPDRDQVQA ICDAVTELRA EGPGDILVFL
SGEREIRDAH EALAAMELPN TEILPLYARL SAADQHRVFQ PHRGRRIVLA TNVAETSLTV
PGIKYVIDTG TARISRYSHR TKVQRLPIEP ISQASANQRK GRCGRTSDGI CIRLYSEEDF
ESRPEFTDPE ILRTNLASVI LQMISLGLGD IGAFPFVDPP DRRQITAGVQ LLTELGALDE
SGKGLTPVGR QLAQLPVDPR MGRMIVEAAR NGCVREVMVI AAALSIQDPR ERPAEKQEHA
DQLHARFRDP NSDFLAYLNL WNYLREQQKA LSNNQFRKLC RAEYLNYLRI REWQDVHSQL
RQLVKQLGFT LNSVPADSQR IHTSLLAGLL SHVGLKDPAK GDYLGARGTR FAVFPGSALF
KKQPRWVASA EIVETSRLWA RVNARVEPEW IEPLAQHLVK RTYSEPHWER KRGAVMAYER
VTLYGIPLVV GRKVNYGRID PETSRELFIR HALVEGDWDT DHRFFHDNRA LLDEVADLEN
RARRRDIVVD DQTLFDFYDE RIGDEVVSAR HFDTWWKKTR RTQPDLLNFE KAMLVTANAE
DVREADYPDT WQQGSLRFAL TYQFEPGADA DGVTVHIPLA VLNQVSGEGF EWQVPGLREE
LVTALIKSLP KPLRRQLVPA PDTARQVLAA VSPSDGPLLD VLSRELQRLR GVTIPREEWQ
WSAVPDYLRM TFRVVDERDR TVAKGKDLEA LRERLVDRLR QTISAAADEL ERSGLRTPEF
GTLPKEFSAR RRGHEVKAYP ALVDEGDSVA VRMMDTPQQQ RAAMWRGTRR LLRLNVPSPA
KYINRNLPNQ AKLVLTRNPH GGVAALVDDC VNCAVDKLMA DAGGPAWDEQ GFAALQERVR
AGLNGTTLTV LRTVEEILRA VHDVEARLES MRGDALAESL ADIRAHLSGL VHAGFVTKTG
FDRLGDLVRY VRGIERRLDK LPTDPARDVQ RLRDIAWLQE EYRAVVDALP PRVEPSPQLA
EIPWMIEELR ISFFAQTLGT AYPVSMKRVL KALDAAAP
|
|---|
| |