Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_13220 |
Symbol | |
ID | 8386658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 1358274 |
End bp | 1359200 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644975406 |
Product | ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
Protein accession | YP_003133196 |
Protein GI | 257055364 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.444748 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCACCT ACATCGCACG CCGACTAGGG CAGTCGGTGT TTCTCATCTT CGGCGCGATC ACCATCGTGT TCTTGGTGCT CCGCGTCATC CCGGGTGACC CGGCAGCACT CATGTTGGGC AGCCAGGCCA CCGAGGAAGA ACTCGCCGCG GCACGGCAAC AGCTGGGACT CGACGACCCG CTGTGGCAGC AGTACGTGCG TCACCTCGGC GAAGTGGTGA CGCTCGACTT CGGTGAATCC TGGCGACTCG GCGGTGATGC GCTGGGCAAC GTCCTGGACC GACTGCCCGC CACCGTGACA CTCGCCGGAT ACGCACTGCT GTTCACCCTG CTGCTCGGTT TCCCGCTCGG TGTCTACGCC GCGCGGCACG AGGGCAAACT CGTCGACCGA CTCGTCTCCT ACCTGTCATT GGCGGGCCAG GCGCTGCCGT CGTTCTGGGT CGGCCTCATG CTGGTGCTCA TCTTCGCCCG GATCTTGGGC GTCCTCCCGG GCACCGCGAA CGGCACCCCG GCCTCGGTGA TCCTGCCCGC GTTCACTCTG GCCCTGCCGT TTCTGGGTTG GCTCGCACGG TTGGTGCGCA ACGGCACGTT GGAGGAACTG GGCAAGGAGT ACGTCCGCAC CGCGCGGTCC AAAGGCCTTT CGGAGCGGGT CGTCTTCAAC GTTCACGTAT TACGGAACAC GCTGACGCCG GTGGTCACCG TACTCGGCCT GGTACTGGGT AACTTCATCG CCGACGCTGT GATCATCGAG CAGGTGTTCG CGTGGCCGGG CATCGGCACG CTGATGATCG ACTCGATCAT CCACCGCGAC TACGCCGTGG CCGAAGCGGC GATCGTGCTC ATCGCGGTGT TCTACATCCT CCTGAACCTG CTGGTGGACG TCCTGTACTT CTACCTCGAT CCGAGAATCA CCTTGGAGAC CGTATGA
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Protein sequence | MITYIARRLG QSVFLIFGAI TIVFLVLRVI PGDPAALMLG SQATEEELAA ARQQLGLDDP LWQQYVRHLG EVVTLDFGES WRLGGDALGN VLDRLPATVT LAGYALLFTL LLGFPLGVYA ARHEGKLVDR LVSYLSLAGQ ALPSFWVGLM LVLIFARILG VLPGTANGTP ASVILPAFTL ALPFLGWLAR LVRNGTLEEL GKEYVRTARS KGLSERVVFN VHVLRNTLTP VVTVLGLVLG NFIADAVIIE QVFAWPGIGT LMIDSIIHRD YAVAEAAIVL IAVFYILLNL LVDVLYFYLD PRITLETV
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