Gene Svir_13200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_13200 
Symbol 
ID8386656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand- 
Start bp1356410 
End bp1357399 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content66% 
IMG OID644975404 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionYP_003133194 
Protein GI257055362 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0348076 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGC TTCTGGAAGT GTCCGACCTG TCCGTCGCGT TCGGACAAAC ACATGCGGTA 
CGGGGGGTGT CCTTCAGCCT GGAACAAGGA CAGACCCTCG CGATCGTGGG CGAATCCGGC 
AGCGGTAAGA GTCTCAGCTC ACTGGCGATA CTCGGTCTGC TGCCACCACA GGCACGCGTC 
GTTTCGGGCA GCATCCGCTG GGACGGCCGT GAGCTGCTGA GCCTCGGCGA CGACGAGTTA 
CGGAAACTCC GCGGTGAGGA ACTCGCCATC ATCTTCCAAG ACCCGCTCAG CGCGTTGAAT 
CCGTCGCTGA CCGTGGGCTA CCAGATCGCG GAGATGTTCC GCCGCCGCCG TGGGGCCCGC 
CGGGAGGAGG CCCGGCGGCG GGCGATCGAG GCGATGACCG AGGTCGGCAT CCCCGACGCG 
GCCCGCCGGG CCGAGAACTA TCCACACGAG TTCTCCGGCG GGATGCGACA ACGGGTGATG 
ATCGCGATGG CACTGGCGTT GGAGCCCCGG CTGCTCATCG CCGACGAACC CACCACCGCG 
TTGGACGTGA CGGTGCAGGC ACAGATCCTG CGGCTGTTGC GGAAGCGGCA GGAAGCCGGC 
CTCTCGATGA TCATCATCAG TCACGACCTC GGCGTGGTGG CCCGCACCGC GCAGCGGGTG 
GTGGTGATGT ACGCGGGTAA GGCCGTGGAA TCGGGCACCG TGGCCGAGTT GTACTCGAAT 
CCCAGCCACC CGTACACGAA AGGCCTGCTG GCGGCGAGTC CCTCGGCTCG TGACACCGGA 
CGCCAGATCC AACCGATCGA CGGCTATCCG CCGGACATCA CGGCGATGCC GAGCGGATGC 
GCGTTCCATC CGCGGTGTCC GTTCGCCCGC GAACGCTGTC GAACGGACGA ACCCGAGCTG 
CGCATCGTCG CACCGGGCAG GACCAGTGCG TGTCATTTCG CGGAGGAGGT GCTCACTCAT 
GGCGAAGCCG TCGGAAACAC CCGTGCTTGA
 
Protein sequence
MSKLLEVSDL SVAFGQTHAV RGVSFSLEQG QTLAIVGESG SGKSLSSLAI LGLLPPQARV 
VSGSIRWDGR ELLSLGDDEL RKLRGEELAI IFQDPLSALN PSLTVGYQIA EMFRRRRGAR 
REEARRRAIE AMTEVGIPDA ARRAENYPHE FSGGMRQRVM IAMALALEPR LLIADEPTTA 
LDVTVQAQIL RLLRKRQEAG LSMIIISHDL GVVARTAQRV VVMYAGKAVE SGTVAELYSN 
PSHPYTKGLL AASPSARDTG RQIQPIDGYP PDITAMPSGC AFHPRCPFAR ERCRTDEPEL 
RIVAPGRTSA CHFAEEVLTH GEAVGNTRA