Gene Svir_11930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_11930 
Symbol 
ID8386530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1234072 
End bp1234602 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content62% 
IMG OID644975282 
Productcell wall-associated hydrolase, invasion-associated protein 
Protein accessionYP_003133074 
Protein GI257055242 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.39384 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATCA GTTCGGGGGC TTTATCGTTC GCACCGAACG CCGGCTCGGC CATGATGAAT 
CAGAACGCGA ACGCCGGCGG TGGCGGAGAA CCTCCGGTCG TAGCGGAGGA GAACGCCCCC
GAACCTGCCG ACGATCCCGA AGAACCAACC GTCCCCATCG GAGAAAAGAA ACCAGCCGCC
CCCCTCGGGG AGAGGATCGT CGACATAGCC GCCCAACAAG CAGGTGACCC ATACGTGTGG
GGAGCCGTGG GCCCCGACCA GTTCGACTGT TCCGGCCTCG TCCGATACGT GCACGCGAAA
GTGGGTATCG AACTACCGCG CACATCACGA CAACAACGAG CCGCTGTCCC TTCGATATCG
AAGAGCGAAA TGCGCCCCGG GGATCTGCTC TTCTTCCATG AAGGCGGTAA CGTGTATCAC
GTCGGCATCT TCGCGGGAAA AGGGAAGATG TGGGCGGCTC CCGAGCCGGG TGACGTCGTG
CGCATGCAAG ACATCTGGAC CGAATCGTTC ACCGTGGGCC GCGCCTGGTG A
 
Protein sequence
MAISSGALSF APNAGSAMMN QNANAGGGGE PPVVAEENAP EPADDPEEPT VPIGEKKPAA 
PLGERIVDIA AQQAGDPYVW GAVGPDQFDC SGLVRYVHAK VGIELPRTSR QQRAAVPSIS
KSEMRPGDLL FFHEGGNVYH VGIFAGKGKM WAAPEPGDVV RMQDIWTESF TVGRAW