| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_11610 |
|---|
| Symbol | |
|---|
| ID | 8386498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 1193443 |
|---|
| End bp | 1194330 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644975251 |
|---|
| Product | carbohydrate ABC transporter membrane protein |
|---|
| Protein accession | YP_003133044 |
|---|
| Protein GI | 257055212 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.798667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACGC CGGTGGTGCT CGTTCTGGCG GTGTTGGTCT TCTATCCGCT GGTCCAGGGC
GTCTACCTGT CCCTGACCAA CGCGAACGAG ATGAACAGCG CACGCACCAT CGGCGCCAAC
AGGATCGAGG CGACCTACGA ATTCGTCGGC CTCGACAACT ACTTCGCCGT CCTGTCGGGC
GAAGAGGGAG CGTTCTATCC ACGGCTGCTG TGGACTCTGG TGTGGACGGT CACCTGCGTG
GTCCTGCACT ACTCCCTCGG CCTCGGCCTG GCGTTACTGC TCAACCGCGC GCTACGGGGC
CGATCCGCCT ATCGCATGCT GCTGATCCTG CCGTGGGCGG TGCCGCCGTT CGTCGCCGCG
TTCGCGTGGC GCCTGATCCT CAACAGCGAA GGCGGCGTGC TCAACTCCAT ACTGAACGCA
TTCGGCTTCG GCAGCGTGGA CTGGCTGGGC GACCCGCTGG CCGCCAAGAT CTCGGTGATC
ATGGTCAACG TCTGGCTCGG CGTCCCGTTC ATGATGGTGG CGCTGCTCGG CGGCCTGCAG
ACCGTGCCGA AGGAGTTGTA CGAAGCGGCC GAAATGGACG GTGCTTCACC GTGGCAGCGG
TTCCGTGCCG TGACCCTGCC CGGTCTGCGT CCCGTTTCCG GAACCGTGAT CCTGCTCGGC
ACCATCTGGA CGTTCAACCA GTTCCCCGTC ATCGCGATGC TCACGGGCGG CGGCCCCGGT
GGCGCGACGA ACATCCTCGT CACCGAAGCG TACGAGCGGG CGTTCCAAGG CATCAGGGAC
TACGCGGGCG CGGCGACCTA CGGCGCCATC ATCGCGTCGA TGCTCGTCGT GTTCGCCTTC
TGCTACCGGC AATGGCTGGA TCGGCAAGCG AGTGAGGTGC CGTCATGA
|
|---|
| Protein sequence | MVTPVVLVLA VLVFYPLVQG VYLSLTNANE MNSARTIGAN RIEATYEFVG LDNYFAVLSG
EEGAFYPRLL WTLVWTVTCV VLHYSLGLGL ALLLNRALRG RSAYRMLLIL PWAVPPFVAA
FAWRLILNSE GGVLNSILNA FGFGSVDWLG DPLAAKISVI MVNVWLGVPF MMVALLGGLQ
TVPKELYEAA EMDGASPWQR FRAVTLPGLR PVSGTVILLG TIWTFNQFPV IAMLTGGGPG
GATNILVTEA YERAFQGIRD YAGAATYGAI IASMLVVFAF CYRQWLDRQA SEVPS
|
|---|
| |