| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_10390 |
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| Symbol | dnaE |
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| ID | 8386376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 1066642 |
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| End bp | 1070223 |
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| Gene Length | 3582 bp |
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| Protein Length | 1193 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644975129 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_003132922 |
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| Protein GI | 257055090 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.146518 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0814814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGAACG ATTCCTTCGT CCACCTGCAC GTCCACACCG AGTACTCGAT GCTCGATGGG
GCGGCGAAGA TCGCTCCGTT GTTCGAGGAG GCGTCCCGGC TGGGGATGCC CGCCGTGGGG
ATGACCGACC ACGGCAACAT GTACGGCGCG GACGACTTCT ACCAGCAGGC GAAGAAGGCC
GGAATCAAAC CGATCATCGG TATCGAGGCC TACGTCGCAC CCGAGAGTCG CTTCCACAAG
AAGCCCGTCT TCTGGGGGAA CACCGGACAG CGCTCCACCG ACGAATTCGG TGAGGGCGGT
GACGTCTCCG GTGGCGGTGC CTACACGCAC ATGACGATGT TGGCGGAGAA CGCCACCGGG
CTGCGGAACC TGTTCACGCT GTCGTCGTTG GCGAGCATGG AGGGCTACTA CCGCAAGCCC
CGGATGGACC GCGAGCTGAT CGCGGAGTAC GCCGAGGGGA TCATCGCTAC CACGGGGTGC
CCCTCCGGTG AGGTGCAGAC GCGGCTGCGG TTGGGGCAGA AGGACGAGGC CCTGCAGGCC
GCGGCGGACT ACCGCGACAT CTTCGGTGCG GAGAACTTCT TCCTGGAGTT GATGGACCAC
GGCCTCGCCA TCGAACGTTC GGTGCGCGAG GGGCTGCTGG AGATCGGGAA GAAGTTGGGG
TTGCAGCCGC TGGCCACCAA CGACTCCCAC TACGTCACCA AGGACCAGGC CGAATCGCAT
TCGGCGTTGC TGTGCGTGCA GTCGGGTAAG ACGTTGTCGG ACCCGACCCG CTTCAAGTTC
GACGGCGACG GCTACTACCT GAAGTCGGCG CAGGAGATGC GTGAGTACTG GGACACCGAG
GTGCCCGGTG CGACCGACTC GACGCTGTTG ATCGCCGAGC GGGTGCAGTC GTACGAAGAG
GTGTACGCCC ACCGCGACCG GATGCCGAAG TTCGAGGTTC CGGAGGGGCA CACCGAGGAG
AGTTGGCTGC ACCACGAGGT CATGCGAGGC CTGAGGTGGC GTTTCCCCGA CGGCATTCCG
GACGGTTACG TCGAGCGCGC CGAGTTCGAG TTGGAAGTCA TCGCTCAGAA GGGCTTCCCG
TCCTACTTCC TCGTCGTCGC CGACTTGATC AACTATGCCC GGAGTGTGGG CATCCGGGTC
GGTCCCGGGC GTGGGTCTGC GGCCGGTTCG CTGGTCGCGT ACGCGTTGGG TATCACCAAT
CTGGACCCGA TCCCGCAGAA CCTGCTGTTC GAGCGGTTCC TCAACCCCGA GCGCGCGTCG
ATGCCCGACA TCGACATCGA CTTCGACGAC CGTCGGCGCG GCGAGATGGT GCGGTACGCC
ACCGAGAAGT ACGGCGCCGA CCGCGTGGCC CAGGTGATCA CCTTCGGCAC CATTAAGACC
AAGGCCGCCA TCAAGGACGC GGCGCGGGTG CACTTCGGTC AGCCGGGCTA CGCGATCGCC
GACAAGATCT CGAAGGCGCT CCCGCCGCCG ATCATGGCGA AGGACATCCC GCTGTCGGGC
ATCGTCGACC CGGAGCACGA GCGCTACCCG GAGGCCGCCG AGGTCCGCTC GTTGATCGAG
AACGACCCCG AGGTCAAGAC GATCTTCGAG ACCGCGCGGG GGCTGGAGGG CCTGATCCGC
AACGCGGGTG TGCACGCCTG CGCGGTCATC ATGTCGAGCG AGCCGCTGCT GGGCACCATT
CCGCTGTGGC AGCGCGACGA CGGCGCCATC ATCACCGGCT GGGACTACCC GTCGTGTGAG
GCCATCGGCC TGTTGAAGAT GGACTTCCTC GGGCTGCGCA ACCTCACCGT CATCGGCGAC
GCGATCGACA ACATCAGGGC CAACCGGGGC GAGGAGATCG ACCTCGACCG GCTCGGACTG
GACGACCCCG AGGCGTACAA GCTGCTGGGT CGGGGCGACA CGCTCGGTGT GTTCCAGCTC
GACGGCGGTG CGATGCGGGA CCTGCTGCGT CGTATGCAGC CCACCGGGTT CGAGGACATC
ATCGCGGTGC TCGCGCTGTA CCGGCCCGGC CCGATGGGCA TGAACGCCCA CAACGACTAC
GCCGACCGCA AGAACGGCCG GCAGCAGATC AAGCCGATCC ACCCGGAGCT CGAGGAACCC
CTGAAGGACA TCCTGGCCGA GACCTACGGC CTGATCGTCT ATCAGGAACA GATCATGCAG
ATCGCGCAGA AGGTCGCCGG CTACTCGATG GGTCGAGCCG ACGTGCTGCG CCGGGCGATG
GGTAAGAAGA AGAAGGAGGT CCTCGAAAAG GAGTTCGAGG GCTTCCGGGC CGGGATGAAG
GAGAACGGCT TCTCCGACGA GGCCATCCAG GCCCTGTGGG ACACGATCCT GCCGTTCGCC
GGGTACGCGT TCAACAAGTC GCACGCGGCC GGATACGGCC TGGTGTCCTA CTGGACCGCG
TACCTGAAGG CGAACTACCC CGCCGAGTAC ATGGCCGCGT TGCTCACCTC GGTCGGTGAC
AACAAGGACA AGTCGGCGGT GTACCTGTCC GAGTGCCGCA GGCTGGGCAT CCGGGTGCTG
CCGCCGGACG TCAACGAGTC GGGTCGTCGC TTCGCCGCTG TCGGCGACGA CATCCGGTTC
GGGCTCGGGG CGATCCGCAA CGTCGGTGCC AACGTCGTCG ACTCGATCAT CGCCACACGG
GAGAAGAAGG GGAAGTACAC GTCGTTCACC GACTTCCTCG ACTCCTCGGA ACTCGTGGTC
TGCAACAAGC GTGTCATCGA GTCGTTGATC AAGGCCGGTG CGTTCGACTC GTTCGGTCAC
ACGCGGCTGT CGATGATGCG CGTGCACGAG GACGCGGTCG ACGCTGTCGT GCCGCTCAAG
CGGCAGGAGG CGATGGGGCA GTTCGACCTG TTCCAGGGCT TCGGCGGCGG GGGCGACGGT
GACACCGCGG TGCAGACGGC GTCGTCGCCG CTGGCGCACC TGAAGTTCGA CGACGAGGAG
TACCCGCGCA AGCAGAAGCT CGCCTACGAA CGCGAGATGC TGGGCCTGTA CGTGTCGGCG
CATCCTCTCG ACGGCGCGGA ACGCATCCTC CGCAAACACG CCAAACGACC GATCGCGGCG
ATCCTGGCGG ATCCGCCGAA GGAGGGTGAG ATCGAGATCG CCGGGCTCAT CACCTCCTTG
GAGCGGCGGG TCAACAAGAA GGGAGAGCCT TGGGCCATCT GCACGGTCGA GGACATGGAC
GCCTCGCTGG AGGTGCTGTT CTTCCCGAAG TCGTACGCGT TGTTCGCCGC TGACCTGGTC
GAGGACAACG CGGTGGTGGT GAAGGGTCGG GTCAACTGGC GTGACGACAA GATGTCGGTG
TTCGCCGCCG GGCTCGTGCC ATTGGACCTC AGCGATGTCG CACTCGGTGA CGAGGAACCA
CCACTGACAC TGCTCGCGTC GGCGGAGAAG ATCACCAAGA GCGTGGTGAT CGAGCTGAAG
CAGACGTTGC AGGCACATCG CGGGGACACC CCGGTACGGC TCAAGCTCGT CGGCAAGTCG
TCCGAGACCC TCTACGCGCT GTACGACTAT CCGGTGACGG TCAGTTCGAT GCTGCTCGGA
GAGTTGAAGA GCATCCCGGG CATAGCGGCG GCGAGCGGTT GA
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| Protein sequence | MSNDSFVHLH VHTEYSMLDG AAKIAPLFEE ASRLGMPAVG MTDHGNMYGA DDFYQQAKKA
GIKPIIGIEA YVAPESRFHK KPVFWGNTGQ RSTDEFGEGG DVSGGGAYTH MTMLAENATG
LRNLFTLSSL ASMEGYYRKP RMDRELIAEY AEGIIATTGC PSGEVQTRLR LGQKDEALQA
AADYRDIFGA ENFFLELMDH GLAIERSVRE GLLEIGKKLG LQPLATNDSH YVTKDQAESH
SALLCVQSGK TLSDPTRFKF DGDGYYLKSA QEMREYWDTE VPGATDSTLL IAERVQSYEE
VYAHRDRMPK FEVPEGHTEE SWLHHEVMRG LRWRFPDGIP DGYVERAEFE LEVIAQKGFP
SYFLVVADLI NYARSVGIRV GPGRGSAAGS LVAYALGITN LDPIPQNLLF ERFLNPERAS
MPDIDIDFDD RRRGEMVRYA TEKYGADRVA QVITFGTIKT KAAIKDAARV HFGQPGYAIA
DKISKALPPP IMAKDIPLSG IVDPEHERYP EAAEVRSLIE NDPEVKTIFE TARGLEGLIR
NAGVHACAVI MSSEPLLGTI PLWQRDDGAI ITGWDYPSCE AIGLLKMDFL GLRNLTVIGD
AIDNIRANRG EEIDLDRLGL DDPEAYKLLG RGDTLGVFQL DGGAMRDLLR RMQPTGFEDI
IAVLALYRPG PMGMNAHNDY ADRKNGRQQI KPIHPELEEP LKDILAETYG LIVYQEQIMQ
IAQKVAGYSM GRADVLRRAM GKKKKEVLEK EFEGFRAGMK ENGFSDEAIQ ALWDTILPFA
GYAFNKSHAA GYGLVSYWTA YLKANYPAEY MAALLTSVGD NKDKSAVYLS ECRRLGIRVL
PPDVNESGRR FAAVGDDIRF GLGAIRNVGA NVVDSIIATR EKKGKYTSFT DFLDSSELVV
CNKRVIESLI KAGAFDSFGH TRLSMMRVHE DAVDAVVPLK RQEAMGQFDL FQGFGGGGDG
DTAVQTASSP LAHLKFDDEE YPRKQKLAYE REMLGLYVSA HPLDGAERIL RKHAKRPIAA
ILADPPKEGE IEIAGLITSL ERRVNKKGEP WAICTVEDMD ASLEVLFFPK SYALFAADLV
EDNAVVVKGR VNWRDDKMSV FAAGLVPLDL SDVALGDEEP PLTLLASAEK ITKSVVIELK
QTLQAHRGDT PVRLKLVGKS SETLYALYDY PVTVSSMLLG ELKSIPGIAA ASG
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