| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_09330 |
|---|
| Symbol | |
|---|
| ID | 8386270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 959529 |
|---|
| End bp | 960527 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644975023 |
|---|
| Product | virulence factor Mce family protein |
|---|
| Protein accession | YP_003132817 |
|---|
| Protein GI | 257054985 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00996] virulence factor Mce family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.892194 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC GGTTCCGGTG GAGGTTGACC CGGCTGGCCA CGGTACTGAC CGTGCTCGCC
GTGGCCACGG CGGGCGCCCT GTGGTGGGTG TTCGCCGATC ACGGCGACAA AACGGTGACG
GCCTACTTCA GCCGCGCCGT CGGCGTGTAC CCGGGTTCGG ATGTGAAGGT GCTCGGCGTC
AGCGTCGGCG AAGTCGAATC GGTGATTCCC GAAAGCACCC GGGTGCGCGT GACCATGACC
GTGGACCGCG ACGCCCCCGT GGCCGCGGAC ACCCGCGCGC TGATCGTGTC GCCGAGCGTG
GTCGCCGACC GGTACGTGCA ACTGTCCGAC CTCGCCCACG GTGGCCCGCG GCTTGCGGAC
GGCGCCGTGA TCCCGTCCGA TCGCACCGCC GTCCCCGTGG AGCTCGACGA GCTGTACCGC
AGCCTCGACG ACCTCGCCAC CGCACTCGGC CCCGAGGGCG CCAACGCCGA CGGTGCCTTG
TCCGACCTGC TCGACGCCGG CGCCGACGTG CTCGACGGCA CCGGCGCGTC CTTCTCCGAA
AGCGTGCGCA ACTTCGGCGA CCTGGCCCGC ACGCTCGCGG ACTCCGACGA CGACCTGTTC
GCCACCATCG ACTCGCTGTC GACGTTCACC ACGATGCTCG CGGGCAACGA CAAGCAGGTG
CGCGAAGCCA CCGAACAGCT CGCCAGGGTG TCCGACACCC TCGCCGCCGA CCGCGAGGAG
CTGTCCGCCG CCTTGGCCAC CCTCGGCGAC GCGCTGGCCG ACGTCCAGTC CTTCGTCGCC
GACAACCGAG CGGCTTTGAA ATCCAACGTG GACAAACTCG CCGAACTCAC CCGACTGGTG
GTGGACCGAC GCGCCTCGCT GGCCGAGGCA CTCGACGTCG CCCCCATCGC CGCCGAGAAC
GCCTACAACG TCTACGACCC GGACAGCGGC ACCCTCCAAG GGCGCATCAC CCCGCTGGAA
TACCTGCCTT TGGTCTCCGC CTCGGGAGGT GGCCGGTGA
|
|---|
| Protein sequence | MTTRFRWRLT RLATVLTVLA VATAGALWWV FADHGDKTVT AYFSRAVGVY PGSDVKVLGV
SVGEVESVIP ESTRVRVTMT VDRDAPVAAD TRALIVSPSV VADRYVQLSD LAHGGPRLAD
GAVIPSDRTA VPVELDELYR SLDDLATALG PEGANADGAL SDLLDAGADV LDGTGASFSE
SVRNFGDLAR TLADSDDDLF ATIDSLSTFT TMLAGNDKQV REATEQLARV SDTLAADREE
LSAALATLGD ALADVQSFVA DNRAALKSNV DKLAELTRLV VDRRASLAEA LDVAPIAAEN
AYNVYDPDSG TLQGRITPLE YLPLVSASGG GR
|
|---|
| |