| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_08980 |
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| Symbol | |
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| ID | 8386235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 921882 |
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| End bp | 923594 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644974989 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_003132785 |
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| Protein GI | 257054953 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.460594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTCGCA CGGAACCTGC AGGTACCCCG CTCGGCGATC GATTCCACCT GTACGACACG
ACGCTGCGTG ACGGCGCCCA GCGCGAGGGT ATCTCGTATT CCATCGCCGA CAAGTTCGCC
GTGGCCCGGC TGCTGGACGA TCTCGGTGTC GGGTTCATCG AAGGCGGTTG GCCGGGTGCG
ATGCCGAAGG ACACCGAATT CTTCGCGCGT GCGGCAGCGG GGGAGCTGAC GTTGCGACAC
GCGGTGTTGG TGGCCTTCGG CTCCACCCGG CGTGCCGGTT TGTCCGTCAC CGAGGACCCC
CAGGTGCGGG CCCTGCTGGA TTCGCAGGCG CCGGTGGTGA CGTTGGTGGC GAAGTCGGAC
GTGCGGCACA TCGAGCGGGC GTTGCGCGTG GATGTCGACG AGGCCTGCGC GATGGTGCGG
GACACCGTGT CGTTCCTCGT GTCGGAGGGG CGGCGGGTCT TCGTGGACGC CGAGCACTTC
TTCGACGGCT ACGCCCACGA TCCGGACACG GCGTTGCGGG TGATCGACGC GGCGGGACAG
GCGGGCGCCG ACGTGGTGGT GTTGTGCGAC ACCAACGGTG GCCAGCTTCC GCTGGGGATC
GCGGAAACCG TGCGCGAAGT GGCCGACCGC ACGGGACTGC GGCTCGGTAT CCACTGCCAG
GACGACACGG GCTGCGCGGT GGCCAACAGC ATCGCGGCCG TGCAGGCGGG GGCGACGCAC
GTGCAGTGCA CCGCCAACGG CTACGGCGAG CGCGCGGGGA ACGCGGACCT GTTCGTGGTG
GCCGGAAACC TCGTGGCCAA ACTCGGGATG CCGGTACTGC CGGAAGGACG CGCCGCCGAA
CTGACTCGCA CCGCGCACGC GCTCGCCGAG ATCGCCAACA TCGCCCCCGA CACCCATCAG
GCCTATGTGG GAGCGTCCGC TTTCGCGCAC AAGGCGGGAC TGCACGCGAG CGCCATCAAG
GTCGATCCGT TGCTGTACAA CCACATCGAT CCGGCCGTGG TGGGCAACGA CATGCGGGTG
TTGGTCACCG AGATGGCGGG CCGGGCGAGT CTGGAACTCA AGGGCGCACA ACTGGGAGTG
GACCTCGCGG ACAAACCTGA GGCGGCTTCC AGCGCGTTGA AGAAGGTGAA GGCGCTGGAG
GCCGAAGGGT GGTCGTTCGA GGCCGCGGAC GCCTCGTTGG AACTGTTGCT CCGCGCCGAG
GCCGACGACG TACCCGTCGA GGCGCCGTTC CGACTGGAGT CCTATCGCGT GGTACTCGAA
CACCGGGTCG ACGGAGAGGT CGTGTCGGAG GCGACGGTCA AGGTGCACGT CGGCGGGGAG
CGGGTGATCG CGACGGCTGA GGGCAACGGC CCGGTGCACG CGCTCGATGC CGCGTTGCGT
CAGGCCCTGC GGGGGCACCT GTCCTGGTTG GACAGCGTGG AGTTGGCCGA TTACAAGGTG
CGTATCCTCG CCGGCAAACC GGGGACCGAC GCCGTGACGC GCGTGCTCGT GGAATCCAGC
GACGGTGAGC GCACGTGGAC CACCGTGGGG GTCCACGCGA ACATCGTCGA GGCGAGCTGG
ATGGCCTTGT GCGATGCGTT GGTGCACAAA TCGCTGCGGA TGCGGGACGC GAACGACGCG
GACACGGCTA CGCAGGTTGC GGACACGACT GCGCAGGCTG CGGACACGGC TGCACAGGTC
GCGCGGGGCG CGGACGCCTC GGCGTCACGT TAG
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| Protein sequence | MSRTEPAGTP LGDRFHLYDT TLRDGAQREG ISYSIADKFA VARLLDDLGV GFIEGGWPGA
MPKDTEFFAR AAAGELTLRH AVLVAFGSTR RAGLSVTEDP QVRALLDSQA PVVTLVAKSD
VRHIERALRV DVDEACAMVR DTVSFLVSEG RRVFVDAEHF FDGYAHDPDT ALRVIDAAGQ
AGADVVVLCD TNGGQLPLGI AETVREVADR TGLRLGIHCQ DDTGCAVANS IAAVQAGATH
VQCTANGYGE RAGNADLFVV AGNLVAKLGM PVLPEGRAAE LTRTAHALAE IANIAPDTHQ
AYVGASAFAH KAGLHASAIK VDPLLYNHID PAVVGNDMRV LVTEMAGRAS LELKGAQLGV
DLADKPEAAS SALKKVKALE AEGWSFEAAD ASLELLLRAE ADDVPVEAPF RLESYRVVLE
HRVDGEVVSE ATVKVHVGGE RVIATAEGNG PVHALDAALR QALRGHLSWL DSVELADYKV
RILAGKPGTD AVTRVLVESS DGERTWTTVG VHANIVEASW MALCDALVHK SLRMRDANDA
DTATQVADTT AQAADTAAQV ARGADASASR
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