| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_08690 |
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| Symbol | ligA |
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| ID | 8386206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 891173 |
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| End bp | 893368 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644974960 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_003132756 |
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| Protein GI | 257054924 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGCTGA CTAGGCTGCT CATCGTGAGC AGCGAGGATC TGACGGCGAG CGAAGAGTTG
GCCTCGGTCG CCGAAAGCGA CCCGGAGGCG GCGAGGACCA CACCCGTCGA GGGCATCCAG
GACGTCCCCG CGGAGGTGCG GGAACGGCAC AGCGCCCTGG TCGAGGAGAT CCGCGGACAC
CAGTTCCGCT ACTACGTGCT GGACGCGCCC ACGATCTCCG ACGCCGAGTT CGACCAGTTG
ATGCGTGACC TGGAGCGGCT GGAGGCCGAA CACCCGGCGC TGGTCTCACC CGACTCACCC
ACTCAGACCG TCGGCGGCAC GTTCTCCACG GAGTTCCGCG CCCACGACCA TCTGGAGCGC
ATGCTCAGCC TCGACAACGT CTTCGACCTC GACGAGTTGC AGGCGTGGAT CGACAGGGTC
GAACGGGAGG TCGGCGGCAG CACGCGGTAC CTGTGCGAGC TGAAGGTCGA CGGGCTCGCG
GTCAACCTCG TGTACGAGAA CGGCAGGCTC GTCCGCGGGC TCACCCGCGG CGACGGGCGC
ACGGGTGAGG ACGTCACGCT CAACGTGCGC ACGGTGCAGG ACGTGCCCGA GCGACTGACG
GCGACCGACC GTTTCCCCGT GCCGGACGTG GTCGAGGTGC GCGGTGAGGT GTACTTCCGG
GTGGAGGAGT TCGCCGACCT CAACGCCGCG CTCGTGAAGG CGGGCAAAGC GCCGTTCGCC
AATCCGCGCA ACGCCGCCGC CGGATCACTG CGGCAGAAGG ATCCCAAGGT CACGCGCAGC
AGGCCGTTGC GACTGGTCTG CCACGGGCTC GGCAAACGGG TCGGTTTCGA ACCCACCCGA
CAGTCCGAGT CGTACGAGGC GCTCGCGGCG TGGGGGCTGC CCGTCTCGCC GTACAGCAAG
GTGATCGACT CCACCGAGGA GTTGATCGAG TACATCCGCT ACTGGAATGA GCACCGGTAC
GACGCGGCCT ACGAGATCGA CGGCGTCGTC GTCAAGGTCG ACGACGTGTC GTTGCAACGC
AGACTCGGCA CCACGTCCCG GGCGCCCCGG TGGGCGGTCG CCTACAAGTA CCCCCCGGAG
GAAGCCAACA CGACGCTGCT CGACATCCGC GTGAACGTGG GTCGCACCGG ACGCGTCACG
CCGTACGCGG TCATGGAACC GGTGAAGGTC GCCGGTTCGA CGGTGTCGAT GGCCACCCTG
CACAACGCCG AGGAGGTCAA GCGCAAGGGC GTGCTCATCG GCGACCGCGT GGTGATCCGC
AAGGCCGGGG ACGTGATCCC CGAGGTACTC GGCCCCATCG TGGACCTGCG CACCGGGACC
GAACGCGAAT TCGTGATGCC CACCCACTGC CCGGAGTGCG GTACGCAGCT GGCGTACGAG
AAGGAGGGCG ACGTCGACAT CCGTTGCCCG AACGCGCGGT CGTGTCCCGC TCAGTTGCGG
GAACGGTTGT TCCACCTCGC CGGGCGCGGT GCGTTCGACA TCGAGGTCCT CGGCTACGAG
GCGGCGGGTG CCCTGCTGCG GTCCGGTGTG ATCGCCGACG AGGGTGACGT GTTCGACCTC
ACCGAGGAGG ATCTCAAGCG GGTCGACCTG TTCGTCACCA AGTCGGGACA GCTGTCCGCC
AACGGACGGC GCCTGCTGGA CAATCTCGCC GCCGCCAAGG ATCGTCCGTT GTGGAAAGTC
CTGGTGGGAC TGTCGATCCG GCACGTCGGC CCGACGGCCG CGCAGGCGCT CGCGCGGGAG
TTCGGTTCCA TCGACGCGAT CGACGCGGCC AGCGAGGAAC GGCTGGCCGA GGTCGACGGG
GTCGGTCCCA CCATCGCCAA GGCGGTTCGC GAATGGTTCG CGGTCGACTG GCACCGCGAG
GTCGTGGAGA AATGGCGCCG CGCGGGAGTG CGCATGGAGG CCGAGCGCGA CACGTCGGTG
CCGCGGAACC TGGAGGGGCT TTCCATCGTG GTCACCGGGA CGTTGCGCGA ATTCTCCCGG
GACGAGGCCA AGGAGGCCAT CATGGCGCGC GGTGGCAAAG CGGCCGGTTC GGTGTCGAAG
AAGACCGCGT TCGTCGTGGT GGGCGATGCG CCCGGTTCGA AGTACGACAA GGCCGTGCAG
TTGAAGATCC CCGTCCTCGA CGAGGACGGT TTCCGAGTAC TGCTGGACCA GGGGCCGGAG
GCCGCGATGA AGGTGGCCGA ACAACCCGCC GACTGA
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| Protein sequence | MGLTRLLIVS SEDLTASEEL ASVAESDPEA ARTTPVEGIQ DVPAEVRERH SALVEEIRGH
QFRYYVLDAP TISDAEFDQL MRDLERLEAE HPALVSPDSP TQTVGGTFST EFRAHDHLER
MLSLDNVFDL DELQAWIDRV EREVGGSTRY LCELKVDGLA VNLVYENGRL VRGLTRGDGR
TGEDVTLNVR TVQDVPERLT ATDRFPVPDV VEVRGEVYFR VEEFADLNAA LVKAGKAPFA
NPRNAAAGSL RQKDPKVTRS RPLRLVCHGL GKRVGFEPTR QSESYEALAA WGLPVSPYSK
VIDSTEELIE YIRYWNEHRY DAAYEIDGVV VKVDDVSLQR RLGTTSRAPR WAVAYKYPPE
EANTTLLDIR VNVGRTGRVT PYAVMEPVKV AGSTVSMATL HNAEEVKRKG VLIGDRVVIR
KAGDVIPEVL GPIVDLRTGT EREFVMPTHC PECGTQLAYE KEGDVDIRCP NARSCPAQLR
ERLFHLAGRG AFDIEVLGYE AAGALLRSGV IADEGDVFDL TEEDLKRVDL FVTKSGQLSA
NGRRLLDNLA AAKDRPLWKV LVGLSIRHVG PTAAQALARE FGSIDAIDAA SEERLAEVDG
VGPTIAKAVR EWFAVDWHRE VVEKWRRAGV RMEAERDTSV PRNLEGLSIV VTGTLREFSR
DEAKEAIMAR GGKAAGSVSK KTAFVVVGDA PGSKYDKAVQ LKIPVLDEDG FRVLLDQGPE
AAMKVAEQPA D
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