| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_08480 |
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| Symbol | |
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| ID | 8386185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 865313 |
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| End bp | 867640 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644974939 |
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| Product | transcriptional accessory protein |
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| Protein accession | YP_003132735 |
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| Protein GI | 257054903 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.205113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTTC ATGACAAGAT CGCCGACGAA CTAGGTGTCC GCCCCGAACA GGTCCGCGCC
GCCGTGGCCC TGCTGGACGA CGGTTCGACG GTGCCCTTCA TCGCGCGCTA CCGCAAGGAG
GTGACCGGGG GCCTCGACGA CACCCAGTTG CGCACGCTCG AGGACCGCCT GCGGTACTTA
CGCGAACTCG AGGAACGGCG CACCGTGATC CTCGAGTCCA TCCGATCCCA GGGCAAGCTC
ACCGAGGAGC TCGAGGCCCA GATCATGGCC GCCGAGGAGA AAGCGCGCCT GGAAGACATC
TATCTGCCCT ACAAGCCGAA ACGTCGCACC AAGGCCCAGA TCGCCCGCGA AGCCGGCCTC
GAACCGCTGG CCGACAGCCT GCTGTCCGAC CCCACCCAGG ACCCCACGGC CGCCGCGGAG
GCGTTCGTGG ACCCCGATGC CGGCGTCGCC GACGCCGACG CCGCTCTCGC CGGGGCCCGC
GCCATCCTCG TGGAGCGTTT CGCCGAGGAC GCCGACCTCA TCGGCGAACT GCGGGAGACG
ATGTGGTCCC AGGGTTGGCT GACCTCGAAA GTGCGAGAGG GCAAGGAGAC CGAGGGCGCC
AAGTTCGCCG ACTACTTCGA CTTCGCCGAA CCGCTCGCGA AACTGCCGTC CCACCGCATC
CTCGCCCTGT TCCGTGGGGA GAAGGAGGAG ATCCTCGACC TCACCACCGA ACCGACCGAA
CCGGGGGGCG AGGCCGACCA CTACGAGGCG CGCATCGCCG AGCGATACGG CATCACCGAC
GCGGGCAGGC CCGCCGACAA ATGGTTGCGC GACACCGTGC GTTGGGCCTG GCGCACCAAG
ATCCTGCTGC ACCTGGGCAT CGACCTGCGG ATGCGACTGC GGCAGTTCGC CGAGGACGAG
GCCGTGCGGG TGTTCGCGGC CAACCTGCGT GACCTGCTGT TGGCCGCACC CGCCGGCTCC
CGGCCGACCA TGGGCCTCGA CCCCGGTTAC CGCACCGGGG TGAAGGTGGC CGTCGTGGAC
GGCACCGGCA AGGTCGTCGC CACCGACACC ATCTACCCGC ACAAACCGCA GGACCGGTGG
GACGAGGCGT TGGCCACGCT GGAACGCCTG GCCCGGCAAC ACCGGGTCGA ACTGATCGCC
ATCGGCAACG GAACCGCGTC CCGGGAGACC GACAAACTCG CGGGCGAGCT CGTCAAACGG
CATCCCGACC TGGGGCTCAC CAAGGTCATG GTGTCGGAGG CGGGCGCGTC GGTGTACTCC
GCGTCGGCGT ACGCGGCGCA GGAACTACCC GACCTCGACG TGTCGTTGCG GGGAGCGGTG
TCGATCGCCC GACGTCTGCA GGACCCCCTC GCCGAACTCG TCAAGATCGA CCCCAAGTCG
ATCGGCGTCG GCCAGTATCA GCACGACGTG GCCGAGTCGA AATTGTCCCG CTCGCTGGAC
GCCGTCGTGG AGGACTGTGT GAACGCCGTC GGCGTCGACC TCAACACCGC CTCCGCGCCT
CTGCTCGCCC GGGTGTCGGG TATCGGGACG AGCCTGGCGG AGAACATCGT CGCCCACCGC
GACGCCAACG GTCCCTTCCG TACCCGCGCC GCCCTCCGGG ACGTGCCGCG GCTCGGGCCG
AAGGCCTTCG AACAGTGTGC GGGCTTCTTG CGCATCCCAG ACGGGGACGA CCCGTTGGAC
GCCTCCGCCG TGCACCCCGA GTCCTACCCC GTGGTGCGGC GCATCCTCGA CGAGACGAAG
GTCGGCATCC GCGAGCTCAT CGGTGACTCC CGCACCCTGC GTTCGCTGCG GCCCGAGAAG
TTCACGGACG AGAAGTTCGG CCTGCCCACG GTCACCGACA TCCTCGCCGA ACTGGAGAAA
CCCGGCCGTG ACCCCCGTCC CGAGTTCAAG ACGGCCACCT TCGCCGAGGG CGTGGACACC
CTGGAGGACC TCAAGCCGGG CATGCGCCTG GAGGGAGTGG TGACCAACGT CGCGGCGTTC
GGTGCTTTCG TCGACATCGG TGTCCACCAA GACGGCCTCG TGCACGTCTC CGCCATGTCG
CATCGGTACG TCTCCGACCC CCGGGACGTC GTCAAACCCG GCGACGTGGT GACGGTCAAG
GTGCTGGACG TGGACGTGCC GCGGAAACGC ATCTCGCTCA CGCTGCGTCT CGACGACGAT
CCCCGATCCT CGGGAGAGGG TCGCCGTTCC GGGCGACAGG GCGACGGGCA GCGGCACCCC
GGCAAGCAGG GCCAGGGCAA ACAGGGCGCC CGCAAACGCG ACAACCGTAA ACCTCCGGCC
GGTGGGGCCA TGGCCGAGGC GTTGCGTAAG GCCGGTTACG GGATCTGA
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| Protein sequence | MSLHDKIADE LGVRPEQVRA AVALLDDGST VPFIARYRKE VTGGLDDTQL RTLEDRLRYL
RELEERRTVI LESIRSQGKL TEELEAQIMA AEEKARLEDI YLPYKPKRRT KAQIAREAGL
EPLADSLLSD PTQDPTAAAE AFVDPDAGVA DADAALAGAR AILVERFAED ADLIGELRET
MWSQGWLTSK VREGKETEGA KFADYFDFAE PLAKLPSHRI LALFRGEKEE ILDLTTEPTE
PGGEADHYEA RIAERYGITD AGRPADKWLR DTVRWAWRTK ILLHLGIDLR MRLRQFAEDE
AVRVFAANLR DLLLAAPAGS RPTMGLDPGY RTGVKVAVVD GTGKVVATDT IYPHKPQDRW
DEALATLERL ARQHRVELIA IGNGTASRET DKLAGELVKR HPDLGLTKVM VSEAGASVYS
ASAYAAQELP DLDVSLRGAV SIARRLQDPL AELVKIDPKS IGVGQYQHDV AESKLSRSLD
AVVEDCVNAV GVDLNTASAP LLARVSGIGT SLAENIVAHR DANGPFRTRA ALRDVPRLGP
KAFEQCAGFL RIPDGDDPLD ASAVHPESYP VVRRILDETK VGIRELIGDS RTLRSLRPEK
FTDEKFGLPT VTDILAELEK PGRDPRPEFK TATFAEGVDT LEDLKPGMRL EGVVTNVAAF
GAFVDIGVHQ DGLVHVSAMS HRYVSDPRDV VKPGDVVTVK VLDVDVPRKR ISLTLRLDDD
PRSSGEGRRS GRQGDGQRHP GKQGQGKQGA RKRDNRKPPA GGAMAEALRK AGYGI
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