Gene Svir_07890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_07890 
Symbol 
ID8386126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp812315 
End bp813841 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content66% 
IMG OID644974882 
Productarabinose efflux permease family protein 
Protein accessionYP_003132678 
Protein GI257054846 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATGC ACCAGCGTTC CGCGGCACCT GCCGGTGCTC GGGCGGGGAT GGCGCTGTTG 
GCGCTTCCCA CGTTTCTGCT GGGGCTGGAC GTGACGGTGC TGTACCTGGT GTTGCCCGCT
ATGGCGGCCG ATTTGGCTCC GTCGGCGACA CAGGTGCTGT GGATCATGGA CGCCTACGGA
TTCCTGCTCG CGGGCTTTCT TGTCACGATG GGAACGTTGG GCGATCGGGT GGGGCGGCGC
CGCCTTCTGA TGATCGGGAT CGCGGCTTTC GCTGCCGTGT CGGTATTCGC CGCGTTCGTC
CCGACTGCGG AGCTGTTGAT CGCTGCGCGT GCGCTGCTGG GTGTCGCGGG TGCGACCTTG
ATGCCCTCGA CCCTGGCGCT GATCTCGAAC ATGTTCCCTG ATCCCCGGCA GCGTGCCGTG
GCGATCGGCG TGTGGGCCAC GATGTTCGCC GGCGGTATGG CCGCCGGGCC GATCCTGGGC
GGTGTGCTGG TGGAGACCTT CTGGTGGGGA GCGGCGTTCT TGGTGGCCGT GCCGATCGCC
GTTGTCGTAC TGCTGCTCGG TCCAGCGGTA CTGCCCGAGT ACCGCGATGG GTGCGGCGAG
CGGGTCGATC TGGTCAGCGT GGCACTGTCT TTGGCGGCGG TCCTGCCGAT CGTCTACGCC
GTCAAGCGGG TAGCGGACTA CGGGTTGAGC GTCAGCGTCA TCGTCGGTGC CGTCATGGGA
ACGCTCGCGG GGTGGGGATT CTGGCGTCGA CAGCGCCGCT CGGATAACCC TCTGCTGGAC
GTCGCACTGT TCCGCAATAC GGCGTTCAGC GTGGCGCTGA CGGTCCTGCT CGTCGGCCTC
GTTGGCGTGG GCGGCAGCAT GTATCTGGTC ACCCAGTATC TGCAACTGGT CGAGGGTCTG
AGCCCGTTTG TCGCAGGCCT GTGGATGGGA CCTCCCGCGC TCGCGATGTT CATCGCCGCC
ATCGGGGCAC CACTGCTGGC GCGGCACATC CGGCCCGGTT ACATCATGGG CGGCATCCTG
TCCGTCTCTT GCGTCGGCTA CCTACTCCTG GCCAGCGCTG GTCTGGACGA TGAACTTCCT
GTTGCGGTCG GGTTCGCCTT CGTCTACCTC GGCCTCGGTG CGATCGCAGC CTTGGGAACC
GACATCGTGG TTGGAACGGC ACCGGCCTCG AAGTCCGGAT CGGCGGCCTC CCTATCTGAG
ACCGTGCAAG AACTGGGGAT CACGATCGGC GTGGCAGTCC TTGGCAGTCT CACCACCGCC
GTCTACCGAT CTCAACTGAC CACTCCCGAT GGCCTCGCCC GTGACGAGGT CGCTGCTTTC
ACCGACAGCC TCAGCGCCGC CACCGCCATC GCCGATCAGC TCCCGGCCGG CGCGCTCGTC
GAAGCGCAGC AAGCCTTCAC CATGGGCCTG AACATCGCCT CCGGCGTCGC CGGAGGCGCG
ATCGTGGTTG TCGCCGTTCT CTGCATGCGT ATGCTGCGTC ACGTGCCAAG ACTCGGTCAG
CCGAAACAAC CGAATCCCAA AGTTTGA
 
Protein sequence
MSMHQRSAAP AGARAGMALL ALPTFLLGLD VTVLYLVLPA MAADLAPSAT QVLWIMDAYG 
FLLAGFLVTM GTLGDRVGRR RLLMIGIAAF AAVSVFAAFV PTAELLIAAR ALLGVAGATL
MPSTLALISN MFPDPRQRAV AIGVWATMFA GGMAAGPILG GVLVETFWWG AAFLVAVPIA
VVVLLLGPAV LPEYRDGCGE RVDLVSVALS LAAVLPIVYA VKRVADYGLS VSVIVGAVMG
TLAGWGFWRR QRRSDNPLLD VALFRNTAFS VALTVLLVGL VGVGGSMYLV TQYLQLVEGL
SPFVAGLWMG PPALAMFIAA IGAPLLARHI RPGYIMGGIL SVSCVGYLLL ASAGLDDELP
VAVGFAFVYL GLGAIAALGT DIVVGTAPAS KSGSAASLSE TVQELGITIG VAVLGSLTTA
VYRSQLTTPD GLARDEVAAF TDSLSAATAI ADQLPAGALV EAQQAFTMGL NIASGVAGGA
IVVVAVLCMR MLRHVPRLGQ PKQPNPKV