Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_07890 |
Symbol | |
ID | 8386126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 812315 |
End bp | 813841 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644974882 |
Product | arabinose efflux permease family protein |
Protein accession | YP_003132678 |
Protein GI | 257054846 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATGC ACCAGCGTTC CGCGGCACCT GCCGGTGCTC GGGCGGGGAT GGCGCTGTTG GCGCTTCCCA CGTTTCTGCT GGGGCTGGAC GTGACGGTGC TGTACCTGGT GTTGCCCGCT ATGGCGGCCG ATTTGGCTCC GTCGGCGACA CAGGTGCTGT GGATCATGGA CGCCTACGGA TTCCTGCTCG CGGGCTTTCT TGTCACGATG GGAACGTTGG GCGATCGGGT GGGGCGGCGC CGCCTTCTGA TGATCGGGAT CGCGGCTTTC GCTGCCGTGT CGGTATTCGC CGCGTTCGTC CCGACTGCGG AGCTGTTGAT CGCTGCGCGT GCGCTGCTGG GTGTCGCGGG TGCGACCTTG ATGCCCTCGA CCCTGGCGCT GATCTCGAAC ATGTTCCCTG ATCCCCGGCA GCGTGCCGTG GCGATCGGCG TGTGGGCCAC GATGTTCGCC GGCGGTATGG CCGCCGGGCC GATCCTGGGC GGTGTGCTGG TGGAGACCTT CTGGTGGGGA GCGGCGTTCT TGGTGGCCGT GCCGATCGCC GTTGTCGTAC TGCTGCTCGG TCCAGCGGTA CTGCCCGAGT ACCGCGATGG GTGCGGCGAG CGGGTCGATC TGGTCAGCGT GGCACTGTCT TTGGCGGCGG TCCTGCCGAT CGTCTACGCC GTCAAGCGGG TAGCGGACTA CGGGTTGAGC GTCAGCGTCA TCGTCGGTGC CGTCATGGGA ACGCTCGCGG GGTGGGGATT CTGGCGTCGA CAGCGCCGCT CGGATAACCC TCTGCTGGAC GTCGCACTGT TCCGCAATAC GGCGTTCAGC GTGGCGCTGA CGGTCCTGCT CGTCGGCCTC GTTGGCGTGG GCGGCAGCAT GTATCTGGTC ACCCAGTATC TGCAACTGGT CGAGGGTCTG AGCCCGTTTG TCGCAGGCCT GTGGATGGGA CCTCCCGCGC TCGCGATGTT CATCGCCGCC ATCGGGGCAC CACTGCTGGC GCGGCACATC CGGCCCGGTT ACATCATGGG CGGCATCCTG TCCGTCTCTT GCGTCGGCTA CCTACTCCTG GCCAGCGCTG GTCTGGACGA TGAACTTCCT GTTGCGGTCG GGTTCGCCTT CGTCTACCTC GGCCTCGGTG CGATCGCAGC CTTGGGAACC GACATCGTGG TTGGAACGGC ACCGGCCTCG AAGTCCGGAT CGGCGGCCTC CCTATCTGAG ACCGTGCAAG AACTGGGGAT CACGATCGGC GTGGCAGTCC TTGGCAGTCT CACCACCGCC GTCTACCGAT CTCAACTGAC CACTCCCGAT GGCCTCGCCC GTGACGAGGT CGCTGCTTTC ACCGACAGCC TCAGCGCCGC CACCGCCATC GCCGATCAGC TCCCGGCCGG CGCGCTCGTC GAAGCGCAGC AAGCCTTCAC CATGGGCCTG AACATCGCCT CCGGCGTCGC CGGAGGCGCG ATCGTGGTTG TCGCCGTTCT CTGCATGCGT ATGCTGCGTC ACGTGCCAAG ACTCGGTCAG CCGAAACAAC CGAATCCCAA AGTTTGA
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Protein sequence | MSMHQRSAAP AGARAGMALL ALPTFLLGLD VTVLYLVLPA MAADLAPSAT QVLWIMDAYG FLLAGFLVTM GTLGDRVGRR RLLMIGIAAF AAVSVFAAFV PTAELLIAAR ALLGVAGATL MPSTLALISN MFPDPRQRAV AIGVWATMFA GGMAAGPILG GVLVETFWWG AAFLVAVPIA VVVLLLGPAV LPEYRDGCGE RVDLVSVALS LAAVLPIVYA VKRVADYGLS VSVIVGAVMG TLAGWGFWRR QRRSDNPLLD VALFRNTAFS VALTVLLVGL VGVGGSMYLV TQYLQLVEGL SPFVAGLWMG PPALAMFIAA IGAPLLARHI RPGYIMGGIL SVSCVGYLLL ASAGLDDELP VAVGFAFVYL GLGAIAALGT DIVVGTAPAS KSGSAASLSE TVQELGITIG VAVLGSLTTA VYRSQLTTPD GLARDEVAAF TDSLSAATAI ADQLPAGALV EAQQAFTMGL NIASGVAGGA IVVVAVLCMR MLRHVPRLGQ PKQPNPKV
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