Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_06430 |
Symbol | |
ID | 8385981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 657025 |
End bp | 657618 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644974740 |
Product | RNA polymerase sigma factor, sigma-70 family |
Protein accession | YP_003132541 |
Protein GI | 257054709 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGTGC CTCAGCTGCC ACACGACAGC ACACAGACCG CGCCGGTGTT GGTCGAGGAT GACGCCACAT GGACGCCGCC GACCTGGGAC GAGGTCGTGC GGCAACACGC CGATCGCGTG TATCGGCTCG CCTACCGCTT GACGGGCAAC GCCCACGATG CGGAAGACCT CACTCAAGAG ACGTTCATCC GGGTGTTCCG TTCACTCGCC TCCTACAAGC CGGGAACGTT CGAGGGTTGG TTGCACCGCA TCACGACGAA TCTGTTCCTC GACATGGCGA GGCGTCGTTC CCGGGTCCGG ATGGAGGGCC TTCCCGAGGA CACCGACCGT CTCGTCGGCG ACGGACCGAG TCCCGAACAG GTGTACTCGG ACACGCACCT GGACCCGGAT CTGCAAGCCG CTCTCGACGA GCTGCCGCCC GAGTTCAAGG CGGCTGTGGT GTTGTGTGAT GTCGAAGGCT TGTCCTACGA GGAGATCGGT GCCACGCTCG GCGTTAAGCT CGGCACTGTT CGCAGCCGGA TCCACCGTGG TCGACAGGCG TTGAAGTCTT CTCTCGAGCG CCGTCGCGCG CTCAAACAGG AGGCACGGGT ATGA
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Protein sequence | MEVPQLPHDS TQTAPVLVED DATWTPPTWD EVVRQHADRV YRLAYRLTGN AHDAEDLTQE TFIRVFRSLA SYKPGTFEGW LHRITTNLFL DMARRRSRVR MEGLPEDTDR LVGDGPSPEQ VYSDTHLDPD LQAALDELPP EFKAAVVLCD VEGLSYEEIG ATLGVKLGTV RSRIHRGRQA LKSSLERRRA LKQEARV
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