Gene Svir_06430 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_06430 
Symbol 
ID8385981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp657025 
End bp657618 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content64% 
IMG OID644974740 
ProductRNA polymerase sigma factor, sigma-70 family 
Protein accessionYP_003132541 
Protein GI257054709 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGTGC CTCAGCTGCC ACACGACAGC ACACAGACCG CGCCGGTGTT GGTCGAGGAT 
GACGCCACAT GGACGCCGCC GACCTGGGAC GAGGTCGTGC GGCAACACGC CGATCGCGTG
TATCGGCTCG CCTACCGCTT GACGGGCAAC GCCCACGATG CGGAAGACCT CACTCAAGAG
ACGTTCATCC GGGTGTTCCG TTCACTCGCC TCCTACAAGC CGGGAACGTT CGAGGGTTGG
TTGCACCGCA TCACGACGAA TCTGTTCCTC GACATGGCGA GGCGTCGTTC CCGGGTCCGG
ATGGAGGGCC TTCCCGAGGA CACCGACCGT CTCGTCGGCG ACGGACCGAG TCCCGAACAG
GTGTACTCGG ACACGCACCT GGACCCGGAT CTGCAAGCCG CTCTCGACGA GCTGCCGCCC
GAGTTCAAGG CGGCTGTGGT GTTGTGTGAT GTCGAAGGCT TGTCCTACGA GGAGATCGGT
GCCACGCTCG GCGTTAAGCT CGGCACTGTT CGCAGCCGGA TCCACCGTGG TCGACAGGCG
TTGAAGTCTT CTCTCGAGCG CCGTCGCGCG CTCAAACAGG AGGCACGGGT ATGA
 
Protein sequence
MEVPQLPHDS TQTAPVLVED DATWTPPTWD EVVRQHADRV YRLAYRLTGN AHDAEDLTQE 
TFIRVFRSLA SYKPGTFEGW LHRITTNLFL DMARRRSRVR MEGLPEDTDR LVGDGPSPEQ
VYSDTHLDPD LQAALDELPP EFKAAVVLCD VEGLSYEEIG ATLGVKLGTV RSRIHRGRQA
LKSSLERRRA LKQEARV