| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05480 |
|---|
| Symbol | |
|---|
| ID | 8385886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 555197 |
|---|
| End bp | 557725 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644974645 |
|---|
| Product | superfamily II RNA helicase |
|---|
| Protein accession | YP_003132449 |
|---|
| Protein GI | 257054617 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4581] Superfamily II RNA helicase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACT TTCTCACAGA CCGCCTGCCC GGCGACACCG ATCCGGACGC GCTCTTCGAC
GCTTTTTCCA CATGGGTGAG TGAGCGCGGT CTCGAGTTGT ACCCGGCGCA GGAGGAAGCG
CTCATCGAGC TCGTCTCCGG CGCCAACGTC ATCCTGTCCA CGCCGACGGG TTCGGGCAAG
AGTCTCGTGG CGGTCGGCGC GCATTTCGCC GCGTTGGCCG AGGGCAGGCG CAGCTTCTAC
ACCGCACCGA TCAAGGCGTT GGTGTCGGAG AAGTTCTTCT CCCTCGTCGA GATCTTCGGG
GCGGACAACG TCGGCATGCT GACCGGTGAC TCCAGCGTCA ACCCCGACGC CCCGATCATC
TGCTGCACCG CGGAGATCCT GGCCAACCTC GCGTTGCGGC TCGGTCCGGA GGCCGATGTC
GACGAGGTGG GGCAGGTGGT GGCCGACGAG TTCCACTTCT ACTCGGAGCC CGACCGGGGG
TGGGCGTGGC AGGTACCGCT GTTGGAGCTG CCCAAGGCCC AGTTCCTGCT CATGTCGGCC
ACGCTCGGTG ACGTCTCGTT CTTCGAACGG GATCTCACGC GCCGGACCGG ACGACACACG
GCCGTGGTGA CGTCGGCGCA GCGGCCGGTT CCGTTGACGT TCCGGTACGC CCTGACGCCC
ATGCACGAGA CCGTGTCGGA ACTGCTGCAC TCCGGCCAGG CGCCCATCTA CATCGTGCAT
TTCTCCCAGG CCGCCGCGGT GGAACGTGCG CAGGCGTTGA TGAGCATCAA CGTGTGCACG
CGGGCGGAGA AGGACGCCAT CGCCGAGGCC ATCGGCGACT TCCGTTTCTC CGCGGGGTTC
GGCAAGACGC TGTCGCGGCT GGTGCGGCAC GGCATCGGCG TGCACCACGC GGGCATGTTG
CCGAAGTACC GGCGTCTGGT CGAGCAGCTG GCGCAGTCCG GTCTGCTCAA GCTGATCTGC
GGTACCGACA CGCTCGGCGT CGGCATCAAC GTGCCCATCC GCACCGTGGT GCTGTCGTCG
TTGACGAAGT TCGACGGCAC CCGACAGCGA CACCTCAAGG CGCGGGAGTT CCACCAGATC
GCCGGCCGCG CGGGCCGGGC CGGCTACGAC ACCGACGGCT ACGTGGTCGT GCAGGCGCCC
GATCACGTCA TCGAGAACGC CAAGGCGCTG GAGAAGGCCG GGGACGACCC GAAGAAGAAA
CGCAAGATCG TGCGCAAGAA GGCGCCGGAG GGGTTCGTCA ACTGGACCGA GAGCACCTTC
GAACGTCTCG TCGCCGCCGA ACCGGAGCCG CTGGTCTCCA GTTTCAAGGT GACGCACTCG
ATGCTGCTCA ACGTCATCTC GCGACCCGGG GACGCCTTCG CGCACATGCG GCGTCTGTTG
GAGGACAACC ACGAGGACCG ACCCTCCCAG CGCAAGCACA TCCTCCGGGC CATCGCCATC
TACCGCGCGC TCCGTGCCGC CGGTGTGGTC GAGGAGCTGG ACGAGCCGGA CGAGGAGGGC
CGTCGTGTCC GGCTGACCAT GGACCTCCAG CTCGACTTCG CGTTGAACCA ACCTTTGTCG
CCGTTCGCGT TGGCCGCGAT AGAACTGCTC GACCCCGAGT CGCCGTCGTA CGCGCTCGAC
GTGGTCTCCA TCGTGGAGGC CACGGTGGAG GACCCGAAGC AGGTGCTGTC CCAACAGCAG
TTCAAGGCGC GTAACGAGGC CCTCGCCGAG ATGAAGGCGC AGGGCATCGA CTACGAGCAG
CGCATGGAAC TGCTGGAGGA CATCACCTAC CCCAAGCCGC TGGAGGAGTT GCTGGAGGCG
GCGTACTCCC GCTACCGGCA GGGGCATCCG TGGGTGGCGG ACTACGAGTT GTCGCCGAAG
TCCGTCGTCC GCGACATGTA CGAGCGGGCG ATGAACTTCG TCGAGTACAT CAACTTCTAC
GGCCTCGCGC GGTCGGAGGG TGTGCTGCTG CGCTACCTCG CCGACGCCTA CGACGCGCTG
CGGCGGACCG TGCCCGACGA GGCCAAGACG GAACCGCTGC AGGACCTCAT CGAATGGTTG
GGGGAGCTGG TGCGGCAGGT GGACTCCAGC CTGTTGGACG AGTGGGAGGC GTTGCGCCAC
CCCGACGAGG TCGAGCTCGA CGAGAGCGGC AGGCCGGAGT TGCCGGAGGG GCCGCCGCCG
GTGACGTACA ACGAACGTGC GTTCCGCGTC CTGGTGCGCA ACGAGATGTT CCGTCGGGTG
CAGCTCGCCG CGCGGGAGGA CTACGAGACG CTCGGCCGGC TCGACGCCGA TTCGGGGTGG
GACGCCGAGG CGTGGGAGGA CGCGCTCGCG GACTACTACG ACACCTACGA CGAGATCCTG
ACCGACGCCG ACGCGCGTGG TCCCGGACTG TTGCTCATCG AGCAGGAGCG GGACGTCTGG
CGGGTGCGAC AGATCTTCCA CGACCCCGAG GGCAACCACG ACTGGGGCAT CAGCGCGGAG
GTGGACCTCG CCGCCTCCGA CGAGGCCGGA ACCCCCGTCA TCCGCATCAC GGACGTCAAC
GAACTCTGA
|
|---|
| Protein sequence | MTDFLTDRLP GDTDPDALFD AFSTWVSERG LELYPAQEEA LIELVSGANV ILSTPTGSGK
SLVAVGAHFA ALAEGRRSFY TAPIKALVSE KFFSLVEIFG ADNVGMLTGD SSVNPDAPII
CCTAEILANL ALRLGPEADV DEVGQVVADE FHFYSEPDRG WAWQVPLLEL PKAQFLLMSA
TLGDVSFFER DLTRRTGRHT AVVTSAQRPV PLTFRYALTP MHETVSELLH SGQAPIYIVH
FSQAAAVERA QALMSINVCT RAEKDAIAEA IGDFRFSAGF GKTLSRLVRH GIGVHHAGML
PKYRRLVEQL AQSGLLKLIC GTDTLGVGIN VPIRTVVLSS LTKFDGTRQR HLKAREFHQI
AGRAGRAGYD TDGYVVVQAP DHVIENAKAL EKAGDDPKKK RKIVRKKAPE GFVNWTESTF
ERLVAAEPEP LVSSFKVTHS MLLNVISRPG DAFAHMRRLL EDNHEDRPSQ RKHILRAIAI
YRALRAAGVV EELDEPDEEG RRVRLTMDLQ LDFALNQPLS PFALAAIELL DPESPSYALD
VVSIVEATVE DPKQVLSQQQ FKARNEALAE MKAQGIDYEQ RMELLEDITY PKPLEELLEA
AYSRYRQGHP WVADYELSPK SVVRDMYERA MNFVEYINFY GLARSEGVLL RYLADAYDAL
RRTVPDEAKT EPLQDLIEWL GELVRQVDSS LLDEWEALRH PDEVELDESG RPELPEGPPP
VTYNERAFRV LVRNEMFRRV QLAAREDYET LGRLDADSGW DAEAWEDALA DYYDTYDEIL
TDADARGPGL LLIEQERDVW RVRQIFHDPE GNHDWGISAE VDLAASDEAG TPVIRITDVN
EL
|
|---|
| |